Browse Element(s) Details


Os.53170.1.S1_at

Description gb:AK071168.1
DB_XREF= gi:32981191
TID=Os.53170.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53170 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023080I21, full insert sequence.
FL= gb:AK071168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1968011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19650Os.5992.1.S1_at11/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19650Os.7199.1.S1_at1/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19660OsAffx.17075.1.S1_at10/118+11763999..11766529hypothetical protein
LOC_Os08g19660Os.55478.1.S1_at1/118+11763999..11766529hypothetical protein
LOC_Os08g19670Os.15295.2.S1_x_at11/118+11767394..11768267expressed protein
LOC_Os08g19670Os.15295.1.S1_at11/118+11767394..11768267expressed protein
LOC_Os08g19680Os.53170.1.S1_at11/118+11774041..11775860expressed protein
LOC_Os08g19694Os.53678.1.S1_at11/118+11779187..11791873NB-ARC domain containing protein, expressed
LOC_Os08g19710NANA8+11795807..11798967hypothetical protein
LOC_Os08g19720OsAffx.8279.1.S1_at1/118+11799424..11804598retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53170.1.S1_at--973--6131Chr08:11775381..11775405 (25 bp)
GAGGTGGACTGCAGCACAAACCCTG
LOC_Os08g19680
Os.53170.1.S1_at--117--4931Chr08:11775427..11775451 (25 bp)
GCTTGGATGGCGACTGCAACTTTAT
LOC_Os08g19680
Os.53170.1.S1_at--30--5151Chr08:11775442..11775466 (25 bp)
GCAACTTTATCAGCCAACTCAGCAG
LOC_Os08g19680
Os.53170.1.S1_at--637--5051Chr08:11775463..11775487 (25 bp)
GCAGCAAGTCTTTTCGTTTATCTCA
LOC_Os08g19680
Os.53170.1.S1_at--833--10131Chr08:11775521..11775545 (25 bp)
TATGCATGACCGCTCTTTTGATAAA
LOC_Os08g19680
Os.53170.1.S1_at--1013--3151Chr08:11775636..11775660 (25 bp)
AATTCGACATGGTTATTTCCTCCTG
LOC_Os08g19680
Os.53170.1.S1_at--177--211Chr08:11775650..11775674 (25 bp)
ATTTCCTCCTGAATGAACTGCTGCA
LOC_Os08g19680
Os.53170.1.S1_at--52--8991Chr08:11775663..11775687 (25 bp)
TGAACTGCTGCATATCAACCCCGAT
LOC_Os08g19680
Os.53170.1.S1_at--893--1771Chr08:11775680..11775704 (25 bp)
ACCCCGATCCTACTGAGTCTTAATG
LOC_Os08g19680
Os.53170.1.S1_at--282--7931Chr08:11775779..11775803 (25 bp)
GGATTTTTAGTTGCTTTCGCACTCT
LOC_Os08g19680
Os.53170.1.S1_at--1042--7691Chr08:11775813..11775837 (25 bp)
GGGTGTTTTAAGTTCCTGTCTATAT
LOC_Os08g19680
Target Sequence 
GAGGTGGACTGCAGCACAAACCCTGCCACATTCACTGAGATCAAGAGCTTGGATGGCGACTGCAACTTTATCAGCCAACT
CAGCAGCAAGTCTTTTCGTTTATCTCATTATGATGTAGTCAAAGATTATCTTATCTATTTTATGCATGACCGCTCTTTTG
ATAAATCTGTGTACAACATGAAAGATGGTACAATGACACCAATTACTGCAGACATGTCAGAGGACAAAATTTAGACACCA
GATGGAAGACTGATGAATTCGACATGGTTATTTCCTCCTGAATGAACTGCTGCATATCAACCCCGATCCTACTGAGTCTT
AATGTATGAAGCACTGATTTTTATAGTAGAAAAACTTATGCATACTTAATTTGTTTTCATGTACCTATGTGAACAAGTGG
ATTTTTAGTTGCTTTCGCACTCTTGGTTGTGGGGGTGTTTTAAGTTCCTGTCTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis