Browse Element(s) Details


Os.15295.2.S1_x_at

Description gb:AK072208.1
DB_XREF= gi:32982231
TID=Os.15295.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15295 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013165E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013165E01, full insert sequence.
FL= gb:AK072208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1967011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19640NANA8+11748527..11748796hypothetical protein
LOC_Os08g19650Os.5992.1.S1_at11/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19650Os.7199.1.S1_at1/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19660OsAffx.17075.1.S1_at10/118+11763999..11766529hypothetical protein
LOC_Os08g19660Os.55478.1.S1_at1/118+11763999..11766529hypothetical protein
LOC_Os08g19670Os.15295.2.S1_x_at11/118+11767394..11768267expressed protein
LOC_Os08g19670Os.15295.1.S1_at11/118+11767394..11768267expressed protein
LOC_Os08g19680Os.53170.1.S1_at11/118+11774041..11775860expressed protein
LOC_Os08g19694Os.53678.1.S1_at11/118+11779187..11791873NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15295.2.S1_x_at--610--6191Chr08:11767906..11767930 (25 bp)
GAGGAAGCCGCATCTGCAGCATCAT
LOC_Os08g19670
Os.15295.2.S1_x_at--607--4131Chr08:11767832..11767856 (25 bp)
CGCTCAACTTCGAGGAGGACGGCGA
LOC_Os08g19670
Os.15295.2.S1_x_at--21--1671Chr08:11767796..11767820 (25 bp)
AGCCGTTCAAGTACATGGCCTTCTC
LOC_Os08g19670
Os.15295.2.S1_x_at--608--3151Chr08:11767702..11767726 (25 bp)
AATTGATTGTTAGGCCGTTCGGATG
LOC_Os08g19670
Os.15295.2.S1_x_at--1036--871Chr08:11767691..11767715 (25 bp)
AGGCCGTTCGGATGTACATACGTAC
LOC_Os08g19670
Os.15295.2.S1_x_at--1105--6571Chr08:11767621..11767645 (25 bp)
GATTCCTTCGATTTTTGTTGGCGAC
LOC_Os08g19670
Os.15295.2.S1_x_at--1066--8811Chr08:11767606..11767630 (25 bp)
TGTTGGCGACTACGAGCGCTGATAT
LOC_Os08g19670
Os.15295.2.S1_x_at--798--7931Chr08:11767571..11767595 (25 bp)
GGATTTGAATCGTTTCTTCTTTTGG
LOC_Os08g19670
Os.15295.2.S1_x_at--169--5051Chr08:11767537..11767561 (25 bp)
GCAGAGATTTCCTTTTCTATTACAA
LOC_Os08g19670
Os.15295.2.S1_x_at--796--1211Chr08:11767513..11767537 (25 bp)
AGTTATCTTGGCTCTGAAGAACGTT
LOC_Os08g19670
Os.15295.2.S1_x_at--416--10071Chr08:11767476..11767500 (25 bp)
TAGTGCTAGTATATGCTTCTGAGAA
LOC_Os08g19670
Target Sequence 
GAGGAAGCCGCATCTGCAGCATCATCAGCAGCAGCAGCTGGCCGGGGAGTTCCGCTACGACCCCGTCAGCTACGCGCTCA
ACTTCGAGGAGGACGGCGACGGCGAGGCCCAGCCGTTCAAGTACATGGCCTTCTCCGCGCGGCTGCCGGCGTCCCCGCCG
CCGCCGCCGCCGCCGACGGCGCTGCCCGTCGACCGGGGTTCTTGAATTGATTGTTAGGCCGTTCGGATGTACATACGTAC
GGGAGATTAAAGTTTGGGTTTCTTTCTCTTTTTTTTTTGTTGTTTGATTCCTTCGATTTTTGTTGGCGACTACGAGCGCT
GATATGTGTACAGGAGGATTTGAATCGTTTCTTCTTTTGGTTTTTTTAAGCAGAGATTTCCTTTTCTATTACAAGTTATC
TTGGCTCTGAAGAACGTTGTTTTTTTGTTTTAGTGCTAGTATATGCTTCTGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15295.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis