Browse Element(s) Details


Os.5992.1.S1_at

Description gb:AK111645.1
DB_XREF= gi:37988308
TID=Os.5992.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013132C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013132C10, full insert sequence.
FL= gb:AK111645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1965011/11Homeobox protein knotted-1-like 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19620OsAffx.17073.1.S1_at11/118+11730182..11731317hypothetical protein
LOC_Os08g19630OsAffx.17074.1.S1_at11/118+11741186..11741428hypothetical protein
LOC_Os08g19640NANA8+11748527..11748796hypothetical protein
LOC_Os08g19650Os.5992.1.S1_at11/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19650Os.7199.1.S1_at1/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19660OsAffx.17075.1.S1_at10/118+11763999..11766529hypothetical protein
LOC_Os08g19660Os.55478.1.S1_at1/118+11763999..11766529hypothetical protein
LOC_Os08g19670Os.15295.2.S1_x_at11/118+11767394..11768267expressed protein
LOC_Os08g19670Os.15295.1.S1_at11/118+11767394..11768267expressed protein
LOC_Os08g19680Os.53170.1.S1_at11/118+11774041..11775860expressed protein
LOC_Os08g19694Os.53678.1.S1_at11/118+11779187..11791873NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009416biological_processresponse to light stimulus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5992.1.S1_at--260--7271Chr08:11758219..11758243 (25 bp)
GTCCAAGAAACAGGGCTACAGCTAA
LOC_Os08g19650
Os.5992.1.S1_at--245--5551Chr08:11758280..11758304 (25 bp)
GAAACTGGCACAGTAACCCATCTTC
LOC_Os08g19650
Os.5992.1.S1_at--881--2451Chr08:11758433..11758457 (25 bp)
AACAATTCGTAGCAGATGATCGCCG
LOC_Os08g19650
Os.5992.1.S1_at--827--531Chr08:11758451..11758475 (25 bp)
ATCGCCGAGGGCTGAACACTATGCT
LOC_Os08g19650
Os.5992.1.S1_at--226--5871Chr08:11758560..11758584 (25 bp)
GAGCCGTATATTAGAGAACCAGTTA
LOC_Os08g19650
Os.5992.1.S1_at--237--311Chr08:11758710..11758734 (25 bp)
ATACCACTGGGTAATACTGCTCATA
LOC_Os08g19650
Os.5992.1.S1_at--1131--1971Chr08:11758725..11758749 (25 bp)
ACTGCTCATAGCACTGGTGTTGATG
LOC_Os08g19650
Os.5992.1.S1_at--822--10391Chr08:11758751..11758775 (25 bp)
TTTTGTTCTCCATGCGTCGTAGACA
LOC_Os08g19650
Os.5992.1.S1_at--1011--5431Chr08:11758783..11758807 (25 bp)
GAACCGTCCGCTTCAGACGATTTTT
LOC_Os08g19650
Os.5992.1.S1_at--788--10011Chr08:11758846..11758870 (25 bp)
TAGCTTATCTATTGTGTTCTGCTGC
LOC_Os08g19650
Os.5992.1.S1_at--799--6711Chr08:11758861..11758885 (25 bp)
GTTCTGCTGCACTCTGTGTGCTTAA
LOC_Os08g19650
Target Sequence 
GTCCAAGAAACAGGGCTACAGCTAAAGCAGATCAACAACTGGTTCATCAACCAAAGGAAAAGAAACTGGCACAGTAACCC
ATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAGTNATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCT
GAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGCAATAGGAGGACAATTGCTTAGATCAGGAAATGTTCT
GCAAGATCAGGATCAGGAGCCGTATATTAGAGAACCAGTTATATTTTATAGACAAAACTAATTGCAAGTAAACATATATA
GTTCTGTAAGCGCTTGATTTGAAGAAAAGGGGAAATTTTTCCAAAGGGGTTGTATAAAANGGCNAAATTTATATTTCAGT
TTCTAGATACCACTGGGTAATACTGCTCATAGCACTGGTGTTGATGTTTTTGTTCTCCATGCGTCGTAGACAAGCGGTTG
AACCGTCCGCTTCAGACGATTTTTTTCACACGTATATATGTATGTATTGCTGTGGGTTTATTTAGCTTATCTATTGTGTT
CTGCTGCACTCTGTGTGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis