Browse Element(s) Details


OsAffx.17073.1.S1_at

Description tigr:9636.m01928
TID=OsAffx.17073.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1962011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19600NANA8+11710780..11711028hypothetical protein
LOC_Os08g19610Os.16882.1.S1_at11/118+11721881..11726764peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g19610Os.16882.2.S1_at11/118+11721881..11726764peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g19610Os.16882.3.S1_x_at11/118+11721881..11726764peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g19620OsAffx.17073.1.S1_at11/118+11730182..11731317hypothetical protein
LOC_Os08g19630OsAffx.17074.1.S1_at11/118+11741186..11741428hypothetical protein
LOC_Os08g19640NANA8+11748527..11748796hypothetical protein
LOC_Os08g19650Os.5992.1.S1_at11/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os08g19650Os.7199.1.S1_at1/118+11752361..11758903Homeobox protein knotted-1-like 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17073.1.S1_at--168--4891Chr08:11730215..11730239 (25 bp)
GCTTTAGACAAGACACCGGTATCCG
LOC_Os08g19620
OsAffx.17073.1.S1_at--1016--2211Chr08:11730222..11730246 (25 bp)
ACAAGACACCGGTATCCGTCAGTGT
LOC_Os08g19620
OsAffx.17073.1.S1_at--101--10151Chr08:11730234..11730258 (25 bp)
TATCCGTCAGTGTCTGCTTTAGCAC
LOC_Os08g19620
OsAffx.17073.1.S1_at--833--7172Chr11:25765378..25765397 (20 bp)
GTCTGCTTTAGCACCTTGAAGATGA
NONE
OsAffx.17073.1.S1_at--442--1391Chr08:11731170..11731194 (25 bp)
AGACTCATATTACAAGTGGTACGGA
LOC_Os08g19620
OsAffx.17073.1.S1_at--954--1451Chr08:11731194..11731218 (25 bp)
AGAAGAGAGCTTGGGCCACCAGGAC
LOC_Os08g19620
OsAffx.17073.1.S1_at--52--3491Chr08:11731213..11731237 (25 bp)
CAGGACGACGATATGATGCGGCTAT
LOC_Os08g19620
OsAffx.17073.1.S1_at--132--6511Chr08:11731222..11731246 (25 bp)
GATATGATGCGGCTATTGCCACAAA
LOC_Os08g19620
OsAffx.17073.1.S1_at--598--10211Chr08:11731235..11731259 (25 bp)
TATTGCCACAAAAAGCCAACGCGGA
LOC_Os08g19620
OsAffx.17073.1.S1_at--215--2651Chr08:11731247..11731271 (25 bp)
AAGCCAACGCGGACAAGAAGCTTGA
LOC_Os08g19620
OsAffx.17073.1.S1_at--681--2211Chr08:11731259..11731283 (25 bp)
ACAAGAAGCTTGAGCCAGAATGGCA
LOC_Os08g19620
Target Sequence 
GCTTTAGACAAGACACCGGTATCCGTCAGTGTCTGCTTTAGCACCTTGAAGATGATCTTGATCGAGAAAGTAGACTCATA
TTACAAGTGGTACGGAGAAGAGAGCTTGGGCCACCAGGACGACGATATGATGCGGCTATTGCCACAAAAAGCCAACGCGG
ACAAGAAGCTTGAGCCAGAATGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis