Browse Element(s) Details


Os.53657.1.S1_at

Description gb:AK100441.1
DB_XREF= gi:32985650
TID=Os.53657.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023089M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023089M04, full insert sequence.
FL= gb:AK100441.1 gb:AK073784.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1959011/11START domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19530NANA8+11669683..11672389retrotransposon protein, putative, unclassified
LOC_Os08g19540NANA8+11676021..11680086retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19550OsAffx.29278.1.S1_at11/118+11684536..11685940expressed protein
LOC_Os08g19570OsAffx.31869.1.S1_at8/118+11689880..11690995retrotransposon protein, putative, unclassified
LOC_Os08g19570OsAffx.31869.5.S1_x_at6/118+11689880..11690995retrotransposon protein, putative, unclassified
LOC_Os08g19570OsAffx.31869.3.S1_s_at1/118+11689880..11690995retrotransposon protein, putative, unclassified
LOC_Os08g19570OsAffx.31869.4.S1_x_at1/118+11689880..11690995retrotransposon protein, putative, unclassified
LOC_Os08g19590Os.53657.1.S1_at11/118+11696261..11704693START domain containing protein, expressed
LOC_Os08g19600NANA8+11710780..11711028hypothetical protein
LOC_Os08g19610Os.16882.1.S1_at11/118+11721881..11726764peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g19610Os.16882.2.S1_at11/118+11721881..11726764peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed
LOC_Os08g19610Os.16882.3.S1_x_at11/118+11721881..11726764peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009913biological_processepidermal cell differentiation
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53657.1.S1_at--429--8231Chr08:11704112..11704136 (25 bp)
GGCAAGAACTGATCTTTCTGGCTCC
LOC_Os08g19590
Os.53657.1.S1_at--836--9311Chr08:11704134..11704158 (25 bp)
TCCCTCATAGTTTACGCCAGGACAG
LOC_Os08g19590
Os.53657.1.S1_at--785--8971Chr08:11704162..11704186 (25 bp)
TGAACACCGTGCATTCCATCATGAA
LOC_Os08g19590
Os.53657.1.S1_at--430--411Chr08:11704179..11704203 (25 bp)
ATCATGAACAGTGGCCTCAACCCTG
LOC_Os08g19590
Os.53657.1.S1_at--416--6911Chr08:11704218..11704242 (25 bp)
GTATCCTCTGGATGTGCCATTCTTC
LOC_Os08g19590
Os.53657.1.S1_at--605--3591Chr08:11704235..11704259 (25 bp)
CATTCTTCCTGATTGCCTGGAATCA
LOC_Os08g19590
Os.53657.1.S1_at--43--1531Chr08:11704326..11704350 (25 bp)
AGCGAAACCGGTGGGTCATTCGTCA
LOC_Os08g19590
Os.53657.1.S1_at--599--9671Chr08:11704348..11704372 (25 bp)
TCACCGTCACTTACCAGATGTTTTT
LOC_Os08g19590
Os.53657.1.S1_at--570--731Chr08:11704365..11704389 (25 bp)
ATGTTTTTCAGCAGCCAAGGTGGCG
LOC_Os08g19590
Os.53657.1.S1_at--863--9711Chr08:11704415..11704439 (25 bp)
TCAAGGCCGTGATGCGCTCAAGAAA
LOC_Os08g19590
Os.53657.1.S1_at--61--3631Chr08:11704625..11704649 (25 bp)
CTTGTTTACCATTTTCAGACTATCG
LOC_Os08g19590
Target Sequence 
GGCAAGAACTGATCTTTCTGGCTCCCTCATAGTTTACGCCAGGACAGATGTGAACACCGTGCATTCCATCATGAACAGTG
GCCTCAACCCTGCCACCGTCTTCCTCGTATCCTCTGGATGTGCCATTCTTCCTGATTGCCTGGAATCATTCCCTCTACAC
CCAGCTGCAACTGCAGATCAGGCCGGCACCTCCAGTGCCGCTATCGCTAGCAGGAGCGAAACCGGTGGGTCATTCGTCAC
CGTCACTTACCAGATGTTTTTCAGCAGCCAAGGTGGCGCAGCACCTGCCAGCTCATCAATTCATCAAGGCCGTGATGCGC
TCAAGAAAGCCACCGACATTTTCAAGGNTGGTCCTCGACACTNTCACCGTGGCATAGCGCAATACCCCAGGGGTAGCATT
TGCATGCGAAANTGAAATCCAGATCGAGTNAAATTTCAGNGTTTAAGACTATGTNGNTTTCTGTTGTTCAGGGGATNGCN
TTTATCTCTNGANAGACCCGTGGANCNNNNNGTTTACCTTGTTTACCATTTTCAGACTATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis