Browse Element(s) Details


OsAffx.29278.1.S1_at

Description tigr:9636.m01920
TID=OsAffx.29278.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1955011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g19520OsAffx.8091.1.S1_at3/118+11661764..11667162retrotransposon protein, putative, unclassified
LOC_Os08g19530NANA8+11669683..11672389retrotransposon protein, putative, unclassified
LOC_Os08g19540NANA8+11676021..11680086retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g19550OsAffx.29278.1.S1_at11/118+11684536..11685940expressed protein
LOC_Os08g19570OsAffx.31869.1.S1_at8/118+11689880..11690995retrotransposon protein, putative, unclassified
LOC_Os08g19570OsAffx.31869.5.S1_x_at6/118+11689880..11690995retrotransposon protein, putative, unclassified
LOC_Os08g19570OsAffx.31869.3.S1_s_at1/118+11689880..11690995retrotransposon protein, putative, unclassified
LOC_Os08g19570OsAffx.31869.4.S1_x_at1/118+11689880..11690995retrotransposon protein, putative, unclassified
LOC_Os08g19590Os.53657.1.S1_at11/118+11696261..11704693START domain containing protein, expressed
LOC_Os08g19600NANA8+11710780..11711028hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29278.1.S1_at--578--4111Chr08:11684769..11684793 (25 bp)
CGAAGAGAAGGCTGCTCCTGGCGAT
LOC_Os08g19550
OsAffx.29278.1.S1_at--198--2951Chr08:11684776..11684800 (25 bp)
AAGGCTGCTCCTGGCGATGGTTTTG
LOC_Os08g19550
OsAffx.29278.1.S1_at--12--9091Chr08:11684781..11684805 (25 bp)
TGCTCCTGGCGATGGTTTTGCTTGT
LOC_Os08g19550
OsAffx.29278.1.S1_at--913--10391Chr08:11684796..11684820 (25 bp)
TTTTGCTTGTAATGCCAATGGCTTC
LOC_Os08g19550
OsAffx.29278.1.S1_at--527--3031Chr08:11684806..11684830 (25 bp)
AATGCCAATGGCTTCGAGGAGAATG
LOC_Os08g19550
OsAffx.29278.1.S1_at--512--7091Chr08:11685063..11685087 (25 bp)
GTCACAAGGCTTCCTTGGAGCACGT
LOC_Os08g19550
OsAffx.29278.1.S1_at--1021--2931Chr08:11685068..11685092 (25 bp)
AAGGCTTCCTTGGAGCACGTGTCGT
LOC_Os08g19550
OsAffx.29278.1.S1_at--395--3631Chr08:11685072..11685096 (25 bp)
CTTCCTTGGAGCACGTGTCGTCGGC
LOC_Os08g19550
OsAffx.29278.1.S1_at--798--4891Chr08:11685155..11685329 (25 bp)
GCTTACAAGGGAATGCCAGGGCATG
LOC_Os08g19550
OsAffx.29278.1.S1_at--626--592Chr08:11685317..11685341 (25 bp)
ATGCCAGGGCATGGCTTCGGTGCAC
LOC_Os08g19550
OsAffx.29278.1.S1_at--301--8631Chr08:11685406..11685430 (25 bp)
TGGTGGCTCGGTGCAGGAGCGCAAT
LOC_Os08g19550
Target Sequence 
CGAAGAGAAGGCTGCTCCTGGCGATGGTTTTGCTTGTAATGCCAATGGCTTCGAGGAGAATGATCGGCACAGTGGTGGAA
GGGCGATGTGGCGCGCGTCCATAGGTTGGACGGCGGCGGCGCGGGCCCGGGTGTCGACATCGACACAGTGGAGGGGAGAG
CGAGGATGCAAGGCGTGGACGAGGAGTAGCGACGCTCACGCGGGCGACGTCCTGGGAGGCGGCGAAGTGACCATCGGTCA
CAAGGCTTCCTTGGAGCACGTGTCGTCGGCGGATGGGTTGGACGGCGATAATGTGAGCCCCGAGTGTCGACATCGCTACA
AGAAGGAGGCTTACAAGGGAATGCCAGGGCATGGCTTCGGTGCACGGCGGGGTGCGTGCGACGCACGGGGAGGGCGTGCC
TGCGACCGGCGCGGCGCACGGCCGGGGTTTGGTGGCTCGGTGCAGGAGCGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis