Browse Element(s) Details


Os.16891.1.S1_at

Description gb:AK106420.1
DB_XREF= gi:32991629
TID=Os.16891.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16891 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B02, full insert sequence.
FL= gb:AK106420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0590011/11FAD binding domain containing protein, expressed
LOC_Os03g058802/11FAD binding domain containing protein, expressed
LOC_Os03g058601/11monooxygenase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05840NANA3+2913950..2916401monooxygenase, putative, expressed
LOC_Os03g05850OsAffx.915.1.S1_at10/113+2916860..2921160retrotransposon protein, putative, unclassified
LOC_Os03g05860Os.16891.1.S1_at1/113+2921884..2922327monooxygenase, putative
LOC_Os03g05870Os.11072.1.S1_at11/113+2926464..2927396Fe-S metabolism associated domain containing protein, expressed
LOC_Os03g05880Os.16891.1.S1_at2/113+2928630..2931667FAD binding domain containing protein, expressed
LOC_Os03g05890OsAffx.12745.1.S1_at11/113+2934944..2935369hypothetical protein
LOC_Os03g05900Os.16891.1.S1_at11/113+2937423..2939509FAD binding domain containing protein, expressed
LOC_Os03g05910Os.8947.1.S1_at11/113+2940857..2943407FAD binding domain containing protein, expressed
LOC_Os03g05920Os.31992.1.S1_at11/113+2943827..2946397FAD binding domain containing protein, expressed
LOC_Os03g05930OsAffx.24986.1.S1_at11/113+2946506..2947084tRNA-splicing endonuclease, putative
LOC_Os03g05930OsAffx.24986.1.S1_s_at11/113+2946506..2947084tRNA-splicing endonuclease, putative
LOC_Os03g05940NANA3+2949649..2950047hypothetical protein
LOC_Os03g05950OsAffx.3142.1.S1_at11/113+2952426..2953513expressed protein
LOC_Os03g05960NANA3+2954334..2956051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g05970OsAffx.4323.2.S1_s_at11/113+2957857..2958129hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16891.1.S1_at--582--5891Chr03:2938913..2938937 (25 bp)
GAGCTCCAAGATCCCAACCGAGGTG
LOC_Os03g05900
Os.16891.1.S1_at--680--6391Chr03:2939183..2939207 (25 bp)
GATCGAGGCGAGTCTACGTGAGTAC
LOC_Os03g05900
Os.16891.1.S1_at--720--3991Chr03:2939199..2939223 (25 bp)
CGTGAGTACGCTAGAATCCGGCGGT
LOC_Os03g05900
Os.16891.1.S1_at--324--7053Chr03:2939278..2939302 (25 bp)
GTAACAATGCGGTCATCAGCTTTCT
LOC_Os03g05900
Os.16891.1.S1_at--149--3571Chr03:2939291..2939315 (25 bp)
CATCAGCTTTCTGCGGGACAAGTGG
LOC_Os03g05900
Os.16891.1.S1_at--181--7311Chr03:2939325..2939349 (25 bp)
GTGCTCGCCGGAAGGCTTCTGAAAA
LOC_Os03g05900
Os.16891.1.S1_at--637--4692Chr03:2939352..2939376 (25 bp)
GCGGACTATGACTGTGGCAAGCTCT
LOC_Os03g05900
Os.16891.1.S1_at--563--8231Chr03:2939367..2939391 (25 bp)
GGCAAGCTCTAAAACGTGGGAACTC
LOC_Os03g05900
Os.16891.1.S1_at--183--7471Chr03:2939382..2939406 (25 bp)
GTGGGAACTCAGTTTTGTACCCAAG
LOC_Os03g05900
Os.16891.1.S1_at--977--7931Chr03:2939425..2939449 (25 bp)
GGATTTTGTACCCATGTGTCTGAAC
LOC_Os03g05900
Os.16891.1.S1_at--804--1591Chr03:2939478..2939502 (25 bp)
AGCTGCCTCAAAACATGTATGGGTT
LOC_Os03g05900
Target Sequence 
GAGCTCCAAGATCCCAACCGAGGTGCTCGAGGTCGTCGAGAGGAGCAACATAAACGACGTGGTCGCGTCGCCGCTGCGTT
TCCGGCCCCCGCTGTCGCTCCTGCTCGCGAGCATCAGCAAGGGGAACGCGTGCNTCGCCGGTGACGCGCTGCACCCGATG
ACGCCTGACCTTGGCCAGGGCGGCTGCGCGGCGCTCGAGGACGGCGTCGTGCTGGCGAGATGCCTCGGCGACNCCCTTCT
CGGTCGGCGGCGGCGCCGCCGAGAGCGAGAGGATCGAGGCGAGTCTACGTGAGTACGCTAGAATCCGGCGGTGGAGGAGC
GTCGAGCTCGTCGGGACAGCCTACGTCGTCGGCATCGTGCAGCAGAGTAACAATGCGGTCATCAGCTTTCTGCGGGACAA
GTGGTTGGCCGGAGTGCTCGCCGGAAGGCTTCTGAAAATGGCGGACTATGACTGTGGCAAGCTCTAAAACGTGGGAACTC
AGTTTTGTACCCAAGTTAATAAGATTACGAAATGGATTTTGTACCCATGTGTCTGAACAAATGATGGAATTGGATTTTGT
GATAAAAGCTGCCTCAAAACATGTATGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis