Browse Element(s) Details


Os.31992.1.S1_at

Description gb:AK106358.1
DB_XREF= gi:32991567
TID=Os.31992.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.31992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-102-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A09, full insert sequence.
FL= gb:AK106358.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0592011/11FAD binding domain containing protein, expressed
LOC_Os03g059905/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05850OsAffx.915.1.S1_at10/113+2916860..2921160retrotransposon protein, putative, unclassified
LOC_Os03g05860Os.16891.1.S1_at1/113+2921884..2922327monooxygenase, putative
LOC_Os03g05870Os.11072.1.S1_at11/113+2926464..2927396Fe-S metabolism associated domain containing protein, expressed
LOC_Os03g05880Os.16891.1.S1_at2/113+2928630..2931667FAD binding domain containing protein, expressed
LOC_Os03g05890OsAffx.12745.1.S1_at11/113+2934944..2935369hypothetical protein
LOC_Os03g05900Os.16891.1.S1_at11/113+2937423..2939509FAD binding domain containing protein, expressed
LOC_Os03g05910Os.8947.1.S1_at11/113+2940857..2943407FAD binding domain containing protein, expressed
LOC_Os03g05920Os.31992.1.S1_at11/113+2943827..2946397FAD binding domain containing protein, expressed
LOC_Os03g05930OsAffx.24986.1.S1_at11/113+2946506..2947084tRNA-splicing endonuclease, putative
LOC_Os03g05930OsAffx.24986.1.S1_s_at11/113+2946506..2947084tRNA-splicing endonuclease, putative
LOC_Os03g05940NANA3+2949649..2950047hypothetical protein
LOC_Os03g05950OsAffx.3142.1.S1_at11/113+2952426..2953513expressed protein
LOC_Os03g05960NANA3+2954334..2956051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g05970OsAffx.4323.2.S1_s_at11/113+2957857..2958129hypothetical protein
LOC_Os03g05980Os.12189.1.S1_at10/113+2965130..296838340S ribosomal protein S9, putative, expressed
LOC_Os03g05980Os.12189.2.S1_x_at2/113+2965130..296838340S ribosomal protein S9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004497molecular_functionmonooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31992.1.S1_at--1127--1512Chr03:2974349..2974373 (25 bp)
AGCAGAGCACCAACCCGGTGATCAA
LOC_Os03g05990
Os.31992.1.S1_at--746--4252Chr03:2974363..2974387 (25 bp)
CCGGTGATCAAGTTCCTCAGGGAGA
LOC_Os03g05990
Os.31992.1.S1_at--699--6692Chr03:2974374..2974398 (25 bp)
GTTCCTCAGGGAGAAGTTCTTGTCA
LOC_Os03g05990
Os.31992.1.S1_at--39--6592Chr03:2974400..2974424 (25 bp)
GATTGCTGGCAAAAACTATGATCGC
LOC_Os03g05990
Os.31992.1.S1_at--245--4432Chr03:2974423..2974447 (25 bp)
GCCATGGCTGATTACGATTGCGGAA
LOC_Os03g05990
Os.31992.1.S1_at--78--5572Chr03:2974445..2974469 (25 bp)
GAAAGCTATGATTCTGTTCACGAGA
NONE
Os.31992.1.S1_at--333--5771Chr03:2946112..2946136 (25 bp)
GAGCGGGAACCGTCTTTAATTAGCA
LOC_Os03g05920
Os.31992.1.S1_at--35--1491Chr03:2946142..2946166 (25 bp)
AGCAATCTTGTGATGTTGTTAACCA
LOC_Os03g05920
Os.31992.1.S1_at--506--7572Chr03:2974571..2974595 (25 bp)
GGGCGAGCTTAAAGTCCACCGTACA
NONE
Os.31992.1.S1_at--833--7011Chr03:2946203..2946227 (25 bp)
GTACTAGTATCACACACTCGGCAGA
LOC_Os03g05920
Os.31992.1.S1_at--387--2192Chr03:2946214..2946238 (25 bp)
ACACACTCGGCAGATGCTCAAGGCA
LOC_Os03g05920
Target Sequence 
AGCAGAGCACCAACCCGGTGATCAAGTTCCTCAGGGAGAAGTTCTTGTCAGGATTGCTGGCAAAAACTATGATCGCCATG
GCTGATTACGATTGCGGAAAGCTATGATTCTGTTCACGAGAAATCAAGAACCCAAGAAGAGAAGAAAGAAATCAGCGGTG
AGCGGGAACCGTCTTTAATTAGCACATGGAGCAATCTTGTGATGTTGTTAACCAAGCACGAGGGGGCGAGCTTAAAGTCC
ACCGTACAACGTACTAGTATCACACACTCGGCAGATGCTCAAGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis