Browse Element(s) Details


Os.12189.1.S1_at

Description gb:AK061350.1
DB_XREF= gi:32971368
TID=Os.12189.1
CNT=103
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-303-F09, full insert sequence.
FL= gb:AK104265.1 gb:AK104111.1 gb:AK104761.1 gb:AK061350.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0598010/1140S ribosomal protein S9, putative, expressed
LOC_Os11g389492/1140S ribosomal protein S9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05910Os.8947.1.S1_at11/113+2940857..2943407FAD binding domain containing protein, expressed
LOC_Os03g05920Os.31992.1.S1_at11/113+2943827..2946397FAD binding domain containing protein, expressed
LOC_Os03g05930OsAffx.24986.1.S1_at11/113+2946506..2947084tRNA-splicing endonuclease, putative
LOC_Os03g05930OsAffx.24986.1.S1_s_at11/113+2946506..2947084tRNA-splicing endonuclease, putative
LOC_Os03g05940NANA3+2949649..2950047hypothetical protein
LOC_Os03g05950OsAffx.3142.1.S1_at11/113+2952426..2953513expressed protein
LOC_Os03g05960NANA3+2954334..2956051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g05970OsAffx.4323.2.S1_s_at11/113+2957857..2958129hypothetical protein
LOC_Os03g05980Os.12189.1.S1_at10/113+2965130..296838340S ribosomal protein S9, putative, expressed
LOC_Os03g05980Os.12189.2.S1_x_at2/113+2965130..296838340S ribosomal protein S9, putative, expressed
LOC_Os03g05990Os.31992.1.S1_at5/113+2971907..2974455hypothetical protein
LOC_Os03g05990OsAffx.3017.1.S1_x_at1/113+2971907..2974455hypothetical protein
LOC_Os03g05990OsAffx.31754.1.S1_x_at1/113+2971907..2974455hypothetical protein
LOC_Os03g06000Os.20535.1.S1_at11/113+2977966..2979110Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06010OsAffx.3144.1.S1_at11/113+2982524..2983686Alpha-expansin 17 precursor, putative, expressed
LOC_Os03g06010OsAffx.3144.1.S1_x_at11/113+2982524..2983686Alpha-expansin 17 precursor, putative, expressed
LOC_Os03g06010OsAffx.8085.1.S1_x_at1/113+2982524..2983686Alpha-expansin 17 precursor, putative, expressed
LOC_Os03g06020OsAffx.24987.1.S1_at11/113+2985441..2986442Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12189.1.S1_at--349--3151Chr03:2968126..2968150 (25 bp)
AATTCAAGCAGGTTGTGCTTCAGGT
LOC_Os03g05980
Os.12189.1.S1_at--709--9071Chr03:2968141..2968165 (25 bp)
TGCTTCAGGTGTTGGTTTATGTTAA
LOC_Os03g05980
Os.12189.1.S1_at--1010--691Chr03:2968159..2968183 (25 bp)
ATGTTAACCCTTTTTGGCATTATGT
LOC_Os03g05980
Os.12189.1.S1_at--283--1711Chr03:2968244..2968268 (25 bp)
ACCAGTGCGCTTGAACTAGTGATAC
LOC_Os03g05980
Os.12189.1.S1_at--565--1112Chr11:22686203..22686223 (21 bp)
AGTGATACTCACTCGTACCAATGCT
NONE
Os.12189.1.S1_at--448--3753Chr11:22686206..22686230 (25 bp)
CTCACTCGTACCAATGCTGTTTTTA
NONE
Os.12189.1.S1_at--426--6971Chr03:2968275..2968299 (25 bp)
GTACCAATGCTGTTTTTAATGTTTT
LOC_Os03g05980
Os.12189.1.S1_at--610--731Chr03:2968293..2968317 (25 bp)
ATGTTTTTATGGATTCGAAGTTGCA
LOC_Os03g05980
Os.12189.1.S1_at--829--6551Chr03:2968340..2968364 (25 bp)
GATTAATTTAGTAGCGTCTCAGGTA
LOC_Os03g05980
Os.12189.1.S1_at--463--6971Chr03:2968350..2968374 (25 bp)
GTAGCGTCTCAGGTAATATTTACAT
LOC_Os03g05980
Os.12189.1.S1_at--131--7073Chr11:22686297..22686321 (25 bp)
GTAATATTTACATGTTCAGACCAAA
NONE
Target Sequence 
AATTCAAGCAGGTTGTGCTTCAGGTGTTGGTTTATGTTAACCCTTTTTGGCATTATGTTAGGTATAGACTTGTGGTTAAT
GCTGTTTTATGGATTCGTTTCATGGTAATCCTCATCGTACCAGTGCGCTTGAACTAGTGATACTCACTCGTACCAATGCT
GTTTTTAATGTTTTTATGGATTCGAAGTTGCAACATGGATTATGGAGTTGTTAAGATTAATTTAGTAGCGTCTCAGGTAA
TATTTACATGTTCAGACCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis