Browse Element(s) Details


Os.12189.2.S1_x_at

Description gb:AK072671.1
DB_XREF= gi:32982694
TID=Os.12189.2
CNT=53
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12189 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-038-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134P20, full insert sequence.
FL= gb:AK104660.1 gb:AK072671.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3894911/1140S ribosomal protein S9, putative, expressed
LOC_Os03g059802/1140S ribosomal protein S9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38900Os.3123.1.S1_a_at11/1111+22657149..22662909YDG/SRA domain containing protein, expressed
LOC_Os11g38910OsAffx.31375.1.S1_x_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38910OsAffx.31375.1.S1_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38920Os.10043.1.S1_at11/1111+22670620..22675017TB2/DP1, HVA22 family protein, expressed
LOC_Os11g38930OsAffx.24986.1.S1_s_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.51135.1.S1_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.24713.2.S1_x_at1/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38949Os.12189.2.S1_x_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.2.S1_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949OsAffx.12746.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38970OsAffx.7348.1.S1_at10/1111+22688209..22689469hypothetical protein
LOC_Os11g38980Os.7200.1.S1_at11/1111+22693562..22695993kelch repeat-containing F-box family protein, putative, expressed
LOC_Os11g38990Os.27219.1.S1_at11/1111+22711152..22716142peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005843cellular_componentcytosolic small ribosomal subunit (sensu Eukaryota)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12189.2.S1_x_at--106--7813Chr11:22685727..22685751 (25 bp)
GGTCGGCAGGCAAATTGTCAACATC
LOC_Os11g38949
Os.12189.2.S1_x_at--767--6432Chr11:22685936..22685960 (25 bp)
GATCATAAAACTTTCTGTGCTGAGT
LOC_Os11g38949
Os.12189.2.S1_x_at--977--9452Chr11:22685949..22685973 (25 bp)
TCTGTGCTGAGTAACTGGGCCCAAA
LOC_Os11g38949
Os.12189.2.S1_x_at--414--1952Chr11:22685962..22685986 (25 bp)
ACTGGGCCCAAATTCTGTAGCTTGC
LOC_Os11g38949
Os.12189.2.S1_x_at--1031--8612Chr11:22685992..22686016 (25 bp)
TGGGTTTCAGAATTCAAGCAGGTTG
LOC_Os11g38949
Os.12189.2.S1_x_at--663--211Chr11:22686056..22686080 (25 bp)
ATGTTAGGTAGCTCGAATTAAAGAT
LOC_Os11g38949
Os.12189.2.S1_x_at--620--3911Chr11:22686085..22686109 (25 bp)
CTGGAGATGTTTAATTTTGGTGTTT
LOC_Os11g38949
Os.12189.2.S1_x_at--1033--9113Chr11:22686141..22686165 (25 bp)
TGCTGTTTTATGGATTCGTTTCATG
LOC_Os11g38949
Os.12189.2.S1_x_at--535--7831Chr11:22686165..22686189 (25 bp)
GGTAATCCTCACTCGTACCAGTGTG
LOC_Os11g38949
Os.12189.2.S1_x_at--158--2012Chr11:22686175..22686199 (25 bp)
ACTCGTACCAGTGTGCTTGAACTAG
LOC_Os11g38949
Os.12189.2.S1_x_at--1039--1091Chr11:22681529..22681795 (25 bp)
AGTGTTTTTATGGATTGGAATTTGC
LOC_Os11g38949
Target Sequence 
GGTCGGCAGGCAAATTGTCAACATCCCNGTCNTTCATGGTGAGGGTTGAGTCTGAGAANCACATTGACTTCTCACTGACA
AGCCCATTCGGTGGAGGCCCCCCTGGTAGGGTGAAGNGGAAGAACCAGAAGAAGGCAAGCGGCGGTGGNGGTGANGGTGA
GGANGAAGATGAGGAATGAGAANNGAAGTTTGCANCTAGTTGTTTCCNTAANGATCATAAAACTTTCTGTGCTGAGTAAC
TGGGCCCAAATTCTGTAGCTTGCCTATCTGGGTTTCAGAATTCAAGCAGGTTGNNNGCCNTNNNTCANNTNTNGGTTTAT
GTTAGCNCTTTTTGGCANNATGTTAGGTAGCTCGAATTAAAGATATGNCTGGAGATGTTTAATTTTGGTGTTTTNATATG
TTTTTGCATTCGGCATNNNNNTNNNGTCNNNNTGCTGTTTTATGGATTCGTTTCATGGTAATCCTCACTCGTACCAGTGT
GCTTGAACTAGTTTNNACTCANTCNTANNCTGTTTTTAGTGTTTTTATGGATTGGAATTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12189.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis