Browse Element(s) Details


Os.10043.1.S1_at

Description gb:AK103473.1
DB_XREF= gi:32988682
TID=Os.10043.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033130B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033130B07, full insert sequence.
FL= gb:AK103473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3892011/11TB2/DP1, HVA22 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38890NANA11+22647580..22653333retrotransposon protein, putative, unclassified
LOC_Os11g38900Os.3123.1.S1_a_at11/1111+22657149..22662909YDG/SRA domain containing protein, expressed
LOC_Os11g38910OsAffx.31375.1.S1_x_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38910OsAffx.31375.1.S1_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38920Os.10043.1.S1_at11/1111+22670620..22675017TB2/DP1, HVA22 family protein, expressed
LOC_Os11g38930OsAffx.24986.1.S1_s_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.51135.1.S1_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.24713.2.S1_x_at1/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38949Os.12189.2.S1_x_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.2.S1_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949OsAffx.12746.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38970OsAffx.7348.1.S1_at10/1111+22688209..22689469hypothetical protein
LOC_Os11g38980Os.7200.1.S1_at11/1111+22693562..22695993kelch repeat-containing F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009414biological_processresponse to water deprivation
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0042538biological_processhyperosmotic salinity response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10043.1.S1_at--615--2731Chr11:22674400..22674424 (25 bp)
AAGAAGGCGGCTGCGAAAGATTCGA
LOC_Os11g38920
Os.10043.1.S1_at--824--5371Chr11:22674432..22674456 (25 bp)
GAAGAAGGCACTGAAGGACTCGAAA
LOC_Os11g38920
Os.10043.1.S1_at--7--2471Chr11:22674532..22674556 (25 bp)
AACAAGCGCGTGACGTTCGCCGAGG
LOC_Os11g38920
Os.10043.1.S1_at--432--551Chr11:22674599..22674623 (25 bp)
ATCCGACCTCCGAGTATCACAGCGT
LOC_Os11g38920
Os.10043.1.S1_at--968--7411Chr11:22674622..22674646 (25 bp)
GTGTACCCGGAGCACAACTCATGGA
LOC_Os11g38920
Os.10043.1.S1_at--814--1491Chr11:22674632..22674656 (25 bp)
AGCACAACTCATGGAGCAGCAGCTT
LOC_Os11g38920
Os.10043.1.S1_at--1054--10011Chr11:22674691..22674802 (25 bp)
TAGAGATCTCTAGACCTGCCAAAAA
LOC_Os11g38920
Os.10043.1.S1_at--962--4851Chr11:22674845..22674869 (25 bp)
GCTAGGAGGCCATTTAAACTCTCTT
LOC_Os11g38920
Os.10043.1.S1_at--746--9831Chr11:22674859..22674883 (25 bp)
TAAACTCTCTTGTTCTAGCTGTCCT
LOC_Os11g38920
Os.10043.1.S1_at--772--1611Chr11:22674875..22674899 (25 bp)
AGCTGTCCTCTATCGATTGTTCTGA
LOC_Os11g38920
Os.10043.1.S1_at--1151--6591Chr11:22674889..22674913 (25 bp)
GATTGTTCTGACTTGGGTCACCATG
LOC_Os11g38920
Target Sequence 
AAGAAGGCGGCTGCGAAAGATTCGAAAGAACAGAAGAAGGCACTGAAGGACTCGAAAGAACTAAAAAAGGCGTTGAAGGA
CTCGAAAGAACAGGGGTCGCAGAAGGATTCAGATGAACTTAAACCAAAGAGCAACAAGCGCGTGACGTTCGCCGAGGTGG
AGCCCGAGAAGGAACTCAAGGCCTCCAACAGCGACTGGCATCCGACCTCCGAGTATCACAGCGTGTACCCGGAGCACAAC
TCATGGAGCAGCAGCTTCATGATCTTTGAGGATGAGAACAGTTACTGGAACTAGAGATCTCTAGACCTGCCAAAAAAAAA
AAGCAGCCCGGTGAAGAGTCTTCAGTTAGTTAGAAGTAGCTAGGAGGCCATTTAAACTCTCTTGTTCTAGCTGTCCTCTA
TCGATTGTTCTGACTTGGGTCACCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10043.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis