Browse Element(s) Details


OsAffx.7348.1.S1_at

Description tigr:9639.m03544
TID=OsAffx.7348.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3897010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38910OsAffx.31375.1.S1_x_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38910OsAffx.31375.1.S1_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38920Os.10043.1.S1_at11/1111+22670620..22675017TB2/DP1, HVA22 family protein, expressed
LOC_Os11g38930OsAffx.24986.1.S1_s_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.51135.1.S1_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.24713.2.S1_x_at1/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38949Os.12189.2.S1_x_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.2.S1_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949OsAffx.12746.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38970OsAffx.7348.1.S1_at10/1111+22688209..22689469hypothetical protein
LOC_Os11g38980Os.7200.1.S1_at11/1111+22693562..22695993kelch repeat-containing F-box family protein, putative, expressed
LOC_Os11g38990Os.27219.1.S1_at11/1111+22711152..22716142peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7348.1.S1_at--58--1771Chr11:22688255..22688279 (25 bp)
ACCTGAAGAATCATAGGGTATACCA
LOC_Os11g38970
OsAffx.7348.1.S1_at--215--7691Chr11:22688270..22688294 (25 bp)
GGGTATACCAGATCAGTTGTGCACT
LOC_Os11g38970
OsAffx.7348.1.S1_at--923--7331Chr11:22688288..22688312 (25 bp)
GTGCACTCTGTTATGGACCGCAAGT
LOC_Os11g38970
OsAffx.7348.1.S1_at--844--8091NONE
GGACCGCAAGTGAAGCACCAAGGAA
NONE
OsAffx.7348.1.S1_at--1028--2071Chr11:22689337..22689361 (25 bp)
ACATTTTATATGCTTGTTCCGTGCT
LOC_Os11g38970
OsAffx.7348.1.S1_at--471--4931Chr11:22689348..22689372 (25 bp)
GCTTGTTCCGTGCTTTAATTTGTTC
LOC_Os11g38970
OsAffx.7348.1.S1_at--121--6711Chr11:22689352..22689376 (25 bp)
GTTCCGTGCTTTAATTTGTTCTCCA
LOC_Os11g38970
OsAffx.7348.1.S1_at--1033--8791Chr11:22689368..22689392 (25 bp)
TGTTCTCCACTGATATTATCCCTAG
LOC_Os11g38970
OsAffx.7348.1.S1_at--792--10271Chr11:22689383..22689407 (25 bp)
TTATCCCTAGTAAAGAAGGCATTTC
LOC_Os11g38970
OsAffx.7348.1.S1_at--216--2831Chr11:22689398..22689422 (25 bp)
AAGGCATTTCTAAGTTCTAACTTCT
LOC_Os11g38970
OsAffx.7348.1.S1_at--253--2831Chr11:22689409..22689433 (25 bp)
AAGTTCTAACTTCTCCATGAATCAA
LOC_Os11g38970
Target Sequence 
ACCTGAAGAATCATAGGGTATACCAGATCAGTTGTGCACTCTGTTATGGACCGCAAGTGAAGCACCAAGGAAAAGTTCTT
CAAGAACATTTTATATGCTTGTTCCGTGCTTTAATTTGTTCTCCACTGATATTATCCCTAGTAAAGAAGGCATTTCTAAG
TTCTAACTTCTCCATGAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis