Browse Element(s) Details


Os.7200.1.S1_at

Description gb:AK070903.1
DB_XREF= gi:32980926
TID=Os.7200.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7200 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023074L02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023074L02, full insert sequence.
FL= gb:AK070903.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3898011/11kelch repeat-containing F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38920Os.10043.1.S1_at11/1111+22670620..22675017TB2/DP1, HVA22 family protein, expressed
LOC_Os11g38930OsAffx.24986.1.S1_s_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.51135.1.S1_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.24713.2.S1_x_at1/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38949Os.12189.2.S1_x_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.2.S1_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949OsAffx.12746.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38970OsAffx.7348.1.S1_at10/1111+22688209..22689469hypothetical protein
LOC_Os11g38980Os.7200.1.S1_at11/1111+22693562..22695993kelch repeat-containing F-box family protein, putative, expressed
LOC_Os11g38990Os.27219.1.S1_at11/1111+22711152..22716142peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7200.1.S1_at--130--10871Chr11:22694021..22694045 (25 bp)
TTGGAAAATCATTGGCAGCCGCCGT
LOC_Os11g38980
Os.7200.1.S1_at--298--4511Chr11:22694001..22694025 (25 bp)
GCCGTTCTGGAAGCTTTGTGTACAA
LOC_Os11g38980
Os.7200.1.S1_at--514--7571Chr11:22693964..22693988 (25 bp)
GGGCTGTTGACATACCAGGGCTATT
LOC_Os11g38980
Os.7200.1.S1_at--830--6191Chr11:22693898..22693922 (25 bp)
GAGGCAAATTCTTCTGAGCTTGTTT
LOC_Os11g38980
Os.7200.1.S1_at--56--9391Chr11:22693862..22693886 (25 bp)
TCGATGGGTAATTTCTGCCTTCTCT
LOC_Os11g38980
Os.7200.1.S1_at--792--4311Chr11:22693845..22693869 (25 bp)
CCTTCTCTGGCATTTTAGGCTGAGC
LOC_Os11g38980
Os.7200.1.S1_at--730--1551Chr11:22693794..22693818 (25 bp)
AGCTTCTTACTTGCTTATGTCTAAT
LOC_Os11g38980
Os.7200.1.S1_at--73--9751Chr11:22693759..22693783 (25 bp)
TAATTCCATTTGGAGGGCCTGCAAA
LOC_Os11g38980
Os.7200.1.S1_at--79--1431Chr11:22693726..22693750 (25 bp)
AGAAAGTGGGACATGCAGCGCAGCA
LOC_Os11g38980
Os.7200.1.S1_at--1114--10232Chr11:22693689..22693713 (25 bp)
TTTGGTGCAACCTCAACATTTTGAT
LOC_Os11g38980
Os.7200.1.S1_at--244--10391Chr11:22693671..22693695 (25 bp)
TTTTGATCTACCTTGGATACCTTCA
LOC_Os11g38980
Target Sequence 
TTGGAAAATCATTGGCAGCCGCCGTTCTGGAAGCTTTGTGTACAATTGTGCTGTGATGGGCTGTTGACATACCAGGGCTA
TTACATTATNGACTGTACATCTTGACCAAAAGGAAGGATAAAAGAGGCAAATTCTTCTGAGCTTGTTTAGTGATTGTGCT
CGATGGGTAATTTCTGCCTTCTCTGGCATTTTAGGCTGAGCTGAAGATTGGGTAGAATTTCTCATGTAGCTTCTTACTTG
CTTATGTCTAATCTCTTCATTTTAATTCCATTTGGAGGGCCTGCAAATGGTTTCCAGAAAGTGGGACATGCAGCGCAGCA
TTAGATTAATAATTTGGTGCAACCTCAACATTTTGATCTACCTTGGATACCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7200.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis