Browse Element(s) Details


Os.27219.1.S1_at

Description gb:AK068821.1
DB_XREF= gi:32978846
TID=Os.27219.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27219 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-307-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013168A08, full insert sequence.
FL= gb:AK068821.1 gb:AK104231.1 gb:AK059904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3899011/11peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38949Os.12189.2.S1_x_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.2.S1_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949OsAffx.12746.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38970OsAffx.7348.1.S1_at10/1111+22688209..22689469hypothetical protein
LOC_Os11g38980Os.7200.1.S1_at11/1111+22693562..22695993kelch repeat-containing F-box family protein, putative, expressed
LOC_Os11g38990Os.27219.1.S1_at11/1111+22711152..22716142peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os11g39000Os.57323.1.S1_at10/1111+22721584..22722899Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os11g39010NANA11+22724235..22725306hypothetical protein
LOC_Os11g39020Os.10975.1.S1_at11/1111+22728789..22732754ABC transporter family protein, expressed
LOC_Os11g39020OsAffx.14733.1.S1_at1/1111+22728789..22732754ABC transporter family protein, expressed
LOC_Os11g39030OsAffx.27387.3.S1_at11/1111+22734713..22735960RNA recognition motif family protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27219.1.S1_at--804--10551Chr11:22712908..22712932 (25 bp)
TTCTTGGAGATGCACCACACCTTGA
LOC_Os11g38990
Os.27219.1.S1_at--362--10731Chr11:22713069..22713093 (25 bp)
TTGAGCAACTTCCAACTCGTAGAGA
LOC_Os11g38990
Os.27219.1.S1_at--468--5891Chr11:22713470..22713494 (25 bp)
GAGCGTATCAGCATTCTGTCAACAT
LOC_Os11g38990
Os.27219.1.S1_at--821--5031Chr11:22715840..22715864 (25 bp)
GCAGAACAGGTTCAAGCTTCTCCCT
LOC_Os11g38990
Os.27219.1.S1_at--724--1551Chr11:22715854..22715878 (25 bp)
AGCTTCTCCCTGACTTGATTGCTGA
LOC_Os11g38990
Os.27219.1.S1_at--251--8971Chr11:22715890..22715914 (25 bp)
TGAAAGCATGGCGAGGGAACCCCTG
LOC_Os11g38990
Os.27219.1.S1_at--767--8171Chr11:22715905..22715929 (25 bp)
GGAACCCCTGGAATGGAATTTGTAT
LOC_Os11g38990
Os.27219.1.S1_at--978--6911Chr11:22715926..22715950 (25 bp)
GTATGTTGTGTGCATTTATCCTAGC
LOC_Os11g38990
Os.27219.1.S1_at--763--9471Chr11:22716002..22716026 (25 bp)
TCTGTTAATCTTTCCAGCACACTTG
LOC_Os11g38990
Os.27219.1.S1_at--403--5111Chr11:22716018..22716042 (25 bp)
GCACACTTGGATCTGTACACAACTA
LOC_Os11g38990
Os.27219.1.S1_at--196--8771Chr11:22716114..22716138 (25 bp)
TGTATATTACCATCTCCATTTCTGC
LOC_Os11g38990
Target Sequence 
TTCTTGGAGATGCACCACACCTTGATGGACAGTATGCTGTATTTGGAAGGCTCACAAAAGGTGATGATACATTAAGAAAA
CTTGAGCAACTTCCAACTCGTAGAGAAGGCATATTTGTAATGCCTATTGAGCGTATCAGCATTCTGTCAACATACTATTA
TGATGTTGATTTAGAGAGCTGTGAAGCAGAAAAGTCCATTCTTAGGAGGAGACTTTCTGAATCAGCATCAGAAGTTGAGA
GATGGAGAAGAAAGTGCTTTGCATGATGCTGGAGTTATGTTAGCAGAACAGGTTCAAGCTTCTCCCTGACTTGATTGCTG
AGGCCTGAATATTGAAAGCATGGCGAGGGAACCCCTGGAATGGAATTTGTATGTTGTGTGCATTTATCCTAGCAAAATGC
TGTAACAGTTCAATAGAAGTGTGGATAATTCTCTCTTCTTTTTTTCTGTTAATCTTTCCAGCACACTTGGATCTGTACAC
AACTACACATCATACTGAATTTGTCATTGCTTTTACAAAAAATACATTGTACTAGTATCTTATTTTACGAAAATATTGTA
TATTACCATCTCCATTTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27219.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis