Browse Element(s) Details


Os.57323.1.S1_at

Description gb:AK111303.1
DB_XREF= gi:32996512
TID=Os.57323.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-B06, full insert sequence.
FL= gb:AK111303.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3900010/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38990Os.27219.1.S1_at11/1111+22711152..22716142peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os11g39000Os.57323.1.S1_at10/1111+22721584..22722899Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os11g39010NANA11+22724235..22725306hypothetical protein
LOC_Os11g39020Os.10975.1.S1_at11/1111+22728789..22732754ABC transporter family protein, expressed
LOC_Os11g39020OsAffx.14733.1.S1_at1/1111+22728789..22732754ABC transporter family protein, expressed
LOC_Os11g39030OsAffx.27387.3.S1_at11/1111+22734713..22735960RNA recognition motif family protein
LOC_Os11g39040OsAffx.19244.1.S1_at10/1111+22744733..22747620hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57323.1.S1_at--93--6971Chr11:22721615..22721639 (25 bp)
GTAGCTTTGCCTAGCTAGGCTCACA
LOC_Os11g39000
Os.57323.1.S1_at--86--1571Chr11:22721627..22721651 (25 bp)
AGCTAGGCTCACAAGCTCAAGCTCT
LOC_Os11g39000
Os.57323.1.S1_at--873--4031Chr11:22721662..22721686 (25 bp)
CGATTAGCAATGTCGTCGAGCCGGC
LOC_Os11g39000
Os.57323.1.S1_at--558--5871Chr11:22721688..22721712 (25 bp)
GAGCCGTACATCGTCGAGATTGGCG
LOC_Os11g39000
Os.57323.1.S1_at--431--871Chr11:22721740..22721764 (25 bp)
ATGGCGGAGCTCATCTCGAAGCTGC
LOC_Os11g39000
Os.57323.1.S1_at--660--8451NONE
GGCCAATGCCAAGCAGGCGTCAAGT
NONE
Os.57323.1.S1_at--333--911Chr11:22722570..22722594 (25 bp)
AGGCGTGCCGCTACATCCGGAGGCT
LOC_Os11g39000
Os.57323.1.S1_at--914--551Chr11:22722692..22722716 (25 bp)
ATCCGTAGCCTACTCATGTAATGCA
LOC_Os11g39000
Os.57323.1.S1_at--34--631Chr11:22722726..22722750 (25 bp)
ATGCTGTCGGCCTAAAATGTTCTCT
LOC_Os11g39000
Os.57323.1.S1_at--243--6731Chr11:22722744..22722768 (25 bp)
GTTCTCTAGCTTCTTCATCTGTAGT
LOC_Os11g39000
Os.57323.1.S1_at--17--7071Chr11:22722822..22722846 (25 bp)
GTAAGCCTTGTCATCTACTATGTAA
LOC_Os11g39000
Target Sequence 
GTAGCTTTGCCTAGCTAGGCTCACAAGCTCAAGCTCTCTCTCTCTCTCGATTAGCAATGTCGTCGAGCCGGCGGAGCCGT
ACATCGTCGAGATTGGCGGCGGCGCCGCCGCCGACGGATGAGCAGATGGCGGAGCTCATCTCGAAGCTGCAGGCCGTCCT
CCCCACCCGCGGCGGCGAGGCCAATGCCAAGCAGGCGTCAAGTGCCGAGGTGCTGCAGGAGGCGTGCCGCTACATCCGGA
GGCTTCACCGGGAGGCGGACGCCCTCAGCGAGAGGCTCGCCGAGCTCCTCCTCCTCCAGCCGTCCGATCTCGCCATCAAC
GGCGCAGATGTGCCCGACCTCATCCGTAGCCTACTCATGTAATGCATCAATATATATGCTGTCGGCCTAAAATGTTCTCT
AGCTTCTTCATCTGTAGTAGCACAGATTAATTCAGCAAATGAAACCAAAAAAAAAAAGAGAGTTACTCAGAGTAAGCCTT
GTCATCTACTATGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis