Browse Element(s) Details


OsAffx.27387.3.S1_at

Description tigr:9639.m03552
TID=OsAffx.27387.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA-binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3903011/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38990Os.27219.1.S1_at11/1111+22711152..22716142peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os11g39000Os.57323.1.S1_at10/1111+22721584..22722899Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os11g39010NANA11+22724235..22725306hypothetical protein
LOC_Os11g39020Os.10975.1.S1_at11/1111+22728789..22732754ABC transporter family protein, expressed
LOC_Os11g39020OsAffx.14733.1.S1_at1/1111+22728789..22732754ABC transporter family protein, expressed
LOC_Os11g39030OsAffx.27387.3.S1_at11/1111+22734713..22735960RNA recognition motif family protein
LOC_Os11g39040OsAffx.19244.1.S1_at10/1111+22744733..22747620hypothetical protein
LOC_Os11g39050OsAffx.31377.1.S1_at11/1111+22748623..22749192hypothetical protein
LOC_Os11g39060OsAffx.31378.1.S1_x_at11/1111+22751541..22751948hypothetical protein
LOC_Os11g39060OsAffx.31378.1.S1_at11/1111+22751541..22751948hypothetical protein
LOC_Os11g39070OsAffx.31379.1.S1_at11/1111+22754463..22754933hypothetical protein
LOC_Os11g39079NANA11+22759453..22761440hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009738biological_processabscisic acid mediated signaling
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27387.3.S1_at--972--7631Chr11:22735050..22735074 (25 bp)
GGGACCTTGCAAAGTACGCGCAGAA
LOC_Os11g39030
OsAffx.27387.3.S1_at--409--2751Chr11:22734997..22735021 (25 bp)
AAGAACCCGATTCTTGCAGCTGCTG
LOC_Os11g39030
OsAffx.27387.3.S1_at--290--5071Chr11:22734982..22735006 (25 bp)
GCAGCTGCTGTGCTGAATTCTGCAT
LOC_Os11g39030
OsAffx.27387.3.S1_at--677--5211Chr11:22734968..22734992 (25 bp)
GAATTCTGCATTGGCATCCACTACA
LOC_Os11g39030
OsAffx.27387.3.S1_at--1--8511Chr11:22734957..22734981 (25 bp)
TGGCATCCACTACAGCTGCGCTGAA
LOC_Os11g39030
OsAffx.27387.3.S1_at--874--4751Chr11:22734919..22734943 (25 bp)
GCTGCATCATCCATAAATCCGGCTG
LOC_Os11g39030
OsAffx.27387.3.S1_at--787--10771Chr11:22734891..22734915 (25 bp)
TTGTTGCCCGCAGTAGTCCGGTGGC
LOC_Os11g39030
OsAffx.27387.3.S1_at--697--7251Chr11:22734876..22734900 (25 bp)
GTCCGGTGGCTGCACCTGCAATGAA
LOC_Os11g39030
OsAffx.27387.3.S1_at--60--3011Chr11:22734857..22734881 (25 bp)
AATGAAGCCATTGGCACCTCGGAGT
LOC_Os11g39030
OsAffx.27387.3.S1_at--659--7731Chr11:22734812..22734836 (25 bp)
GGTGGTGCCATCTCCGGTGAAGATT
LOC_Os11g39030
OsAffx.27387.3.S1_at--806--7331Chr11:22734768..22734792 (25 bp)
GTGCAGGATTGCTTGGGCCATACAA
LOC_Os11g39030
Target Sequence 
GGGACCTTGCAAAGTACGCGCAGAACCCGGCACAGGCCGCGGCATTGCTCGGGAAGAACCCGATTCTTGCAGCTGCTGTG
CTGAATTCTGCATTGGCATCCACTACAGCTGCGCTGAAGCCGAACCCAGCAGCTGCATCATCCATAAATCCGGCTGCTGT
TGTTGCCCGCAGTAGTCCGGTGGCTGCACCTGCAATGAAGCCATTGGCACCTCGGAGTCCAGCAGCTGCTGCAGCAGCGG
TGGTGCCATCTCCGGTGAAGATTGCTGCTGGAATAAGCGGCGGTGCAGGATTGCTTGGGCCATACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27387.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis