Browse Element(s) Details


Os.10975.1.S1_at

Description gb:AK059060.1
DB_XREF= gi:32969078
TID=Os.10975.1
CNT=24
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.10975 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-G01, full insert sequence.
FL= gb:AK059060.1 gb:AK120191.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3902011/11ABC transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38990Os.27219.1.S1_at11/1111+22711152..22716142peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os11g39000Os.57323.1.S1_at10/1111+22721584..22722899Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os11g39010NANA11+22724235..22725306hypothetical protein
LOC_Os11g39020Os.10975.1.S1_at11/1111+22728789..22732754ABC transporter family protein, expressed
LOC_Os11g39020OsAffx.14733.1.S1_at1/1111+22728789..22732754ABC transporter family protein, expressed
LOC_Os11g39030OsAffx.27387.3.S1_at11/1111+22734713..22735960RNA recognition motif family protein
LOC_Os11g39040OsAffx.19244.1.S1_at10/1111+22744733..22747620hypothetical protein
LOC_Os11g39050OsAffx.31377.1.S1_at11/1111+22748623..22749192hypothetical protein
LOC_Os11g39060OsAffx.31378.1.S1_x_at11/1111+22751541..22751948hypothetical protein
LOC_Os11g39060OsAffx.31378.1.S1_at11/1111+22751541..22751948hypothetical protein
LOC_Os11g39070OsAffx.31379.1.S1_at11/1111+22754463..22754933hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10975.1.S1_at--1134--1291Chr11:22732268..22732292 (25 bp)
AGATGCAGGCATTCCAGCAAAGCAA
LOC_Os11g39020
Os.10975.1.S1_at--1122--111Chr11:22732344..22732368 (25 bp)
ATTCATGGTATCATCCACGGTGCCA
LOC_Os11g39020
Os.10975.1.S1_at--171--7791Chr11:22732362..22732386 (25 bp)
GGTGCCATACACCTCATTTGCGACA
LOC_Os11g39020
Os.10975.1.S1_at--1080--9591Chr11:22732375..22732399 (25 bp)
TCATTTGCGACACCAGTGACAAGGC
LOC_Os11g39020
Os.10975.1.S1_at--922--891Chr11:22732400..22732424 (25 bp)
AGGCGCATGGCCTGCTGTAATGCTA
LOC_Os11g39020
Os.10975.1.S1_at--854--311Chr11:22732427..22732451 (25 bp)
ATACTCCATATATCACTAGCAACTG
LOC_Os11g39020
Os.10975.1.S1_at--806--5331Chr11:22732471..22732495 (25 bp)
GAAGTAATCCTAGCAGTAGCATCAT
LOC_Os11g39020
Os.10975.1.S1_at--994--8011Chr11:22732497..22732521 (25 bp)
GGAGGACCAAATGCTGTAACTAAAG
LOC_Os11g39020
Os.10975.1.S1_at--36--311Chr11:22732599..22732623 (25 bp)
ATACCAATTCATGTTCTTCCAGCTT
LOC_Os11g39020
Os.10975.1.S1_at--268--1231Chr11:22732619..22732643 (25 bp)
AGCTTTCACCCATACGGAGGAACCA
LOC_Os11g39020
Os.10975.1.S1_at--1139--9031Chr11:22732662..22732686 (25 bp)
TGCAGCTGGGCAATTATATCATGGT
LOC_Os11g39020
Target Sequence 
AGATGCAGGCATTCCAGCAAAGCAAGCAAAAATCGAAATCGCTGAAAAACGCGAAGAGGTGGAAGTGAGAATCCTGATTC
ATGGTATCATCCACGGTGCCATACACCTCATTTGCGACACCAGTGACAAGGCAGGCGCATGGCCTGCTGTAATGCTATTA
TACTCCATATATCACTAGCAACTGGTGTACATACATCAGAAAGGAAGTAATCCTAGCAGTAGCATCATAGGAGGACCAAA
TGCTGTAACTAAAGCAGGAAATGATACATGACCTTGTACATAATGCAGGCAGTTTCTGATGGAGGCATGCTTTATTTTGT
ATCAAGTAGCAATACCAATTCATGTTCTTCCAGCTTTCACCCATACGGAGGAACCACACATTGTAAAAAGTTACTGCAGC
TGGGCAATTATATCATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis