Browse Element(s) Details


OsAffx.19244.1.S1_at

Description tigr:9639.m03553
TID=OsAffx.19244.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3904010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39000Os.57323.1.S1_at10/1111+22721584..22722899Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os11g39010NANA11+22724235..22725306hypothetical protein
LOC_Os11g39020Os.10975.1.S1_at11/1111+22728789..22732754ABC transporter family protein, expressed
LOC_Os11g39020OsAffx.14733.1.S1_at1/1111+22728789..22732754ABC transporter family protein, expressed
LOC_Os11g39030OsAffx.27387.3.S1_at11/1111+22734713..22735960RNA recognition motif family protein
LOC_Os11g39040OsAffx.19244.1.S1_at10/1111+22744733..22747620hypothetical protein
LOC_Os11g39050OsAffx.31377.1.S1_at11/1111+22748623..22749192hypothetical protein
LOC_Os11g39060OsAffx.31378.1.S1_x_at11/1111+22751541..22751948hypothetical protein
LOC_Os11g39060OsAffx.31378.1.S1_at11/1111+22751541..22751948hypothetical protein
LOC_Os11g39070OsAffx.31379.1.S1_at11/1111+22754463..22754933hypothetical protein
LOC_Os11g39079NANA11+22759453..22761440hypothetical protein
LOC_Os11g39090OsAffx.19244.2.S1_at11/1111+22761721..22762278hypothetical protein
LOC_Os11g39100OsAffx.7350.1.S1_at11/1111+22770181..22770783hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19244.1.S1_at--5--1031Chr11:22746698..22746722 (25 bp)
AGGTCGACGAGAGCTACTTCGCCAA
LOC_Os11g39040
OsAffx.19244.1.S1_at--271--9851Chr11:22746684..22746708 (25 bp)
TACTTCGCCAATCAGGCCGAGATAC
LOC_Os11g39040
OsAffx.19244.1.S1_at--866--8711NONE
TGTCGATCGCTCTACAGCCACAATC
NONE
OsAffx.19244.1.S1_at--776--2631Chr11:22744987..22745011 (25 bp)
AACCATCCGTACGAGCTTAGTAGAC
LOC_Os11g39040
OsAffx.19244.1.S1_at--236--6951Chr11:22744968..22744992 (25 bp)
GTAGACATCTCCAGAGTACTCCAGG
LOC_Os11g39040
OsAffx.19244.1.S1_at--471--1171Chr11:22744954..22744978 (25 bp)
AGTACTCCAGGCAAGGCGAGGCAAG
LOC_Os11g39040
OsAffx.19244.1.S1_at--374--3171Chr11:22744926..22744950 (25 bp)
AATTGCAGCGGCCAATCGAGCGGAT
LOC_Os11g39040
OsAffx.19244.1.S1_at--590--5771Chr11:22744874..22744898 (25 bp)
GACGATCGTGAAGTCGGTCACCGGT
LOC_Os11g39040
OsAffx.19244.1.S1_at--702--7311Chr11:22744851..22744875 (25 bp)
GTGCTGCAGCCGAGGAGATCTTCAC
LOC_Os11g39040
OsAffx.19244.1.S1_at--277--5391Chr11:22744792..22744816 (25 bp)
GAAGAATTCGCCAAGATCGACCTGA
LOC_Os11g39040
OsAffx.19244.1.S1_at--111--2771Chr11:22744768..22744792 (25 bp)
AAGAGCATCAAGTTCGGCGACTGGG
LOC_Os11g39040
Target Sequence 
AGGTCGACGAGAGCTACTTCGCCAATCAGGCCGAGATACAGGCTCAGCTCAAGGATGGGCCAAGATCGACTGGGGCGACA
TCGTCTTCGCCGACTGGGATGACTTCGACGACCCCAATTGCTGTCGATCGCTCTACAGCCACAATCCCCAACCATCCGTA
CGAGCTTAGTAGACATCTCCAGAGTACTCCAGGCAAGGCGAGGCAAGGCGAATTGCAGCGGCCAATCGAGCGGATCAAGC
GCATGGAGGCCGAGAAGGGTACGACGATCGTGAAGTCGGTCACCGGTGCTGCAGCCGAGGAGATCTTCACCGAGCAGGAG
GATGAGCTGCAGGCTCTGGTCAGCGAAGAATTCGCCAAGATCGACCTGAAGAGCATCAAGTTCGGCGACTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis