Browse Element(s) Details


OsAffx.19244.2.S1_at

Description tigr:9639.m03558
TID=OsAffx.19244.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3909011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39040OsAffx.19244.1.S1_at10/1111+22744733..22747620hypothetical protein
LOC_Os11g39050OsAffx.31377.1.S1_at11/1111+22748623..22749192hypothetical protein
LOC_Os11g39060OsAffx.31378.1.S1_x_at11/1111+22751541..22751948hypothetical protein
LOC_Os11g39060OsAffx.31378.1.S1_at11/1111+22751541..22751948hypothetical protein
LOC_Os11g39070OsAffx.31379.1.S1_at11/1111+22754463..22754933hypothetical protein
LOC_Os11g39079NANA11+22759453..22761440hypothetical protein
LOC_Os11g39090OsAffx.19244.2.S1_at11/1111+22761721..22762278hypothetical protein
LOC_Os11g39100OsAffx.7350.1.S1_at11/1111+22770181..22770783hypothetical protein
LOC_Os11g39110OsAffx.31380.1.S1_at11/1111+22773401..22773700hypothetical protein
LOC_Os11g39120Os.56116.1.S1_at11/1111+22782621..22783474expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19244.2.S1_at--876--4791Chr11:22761753..22761777 (25 bp)
GCTCGATCGATCACCGACAAACGCG
LOC_Os11g39090
OsAffx.19244.2.S1_at--151--9391Chr11:22761759..22761783 (25 bp)
TCGATCACCGACAAACGCGCAAAAT
LOC_Os11g39090
OsAffx.19244.2.S1_at--521--1811Chr11:22761773..22761797 (25 bp)
ACGCGCAAAATATGGACGCTTCTGC
LOC_Os11g39090
OsAffx.19244.2.S1_at--900--271Chr11:22761782..22761806 (25 bp)
ATATGGACGCTTCTGCGACGAAGAA
LOC_Os11g39090
OsAffx.19244.2.S1_at--592--2731Chr11:22761802..22761826 (25 bp)
AAGAAGGCGGCAGCTTCCGACGAGG
LOC_Os11g39090
OsAffx.19244.2.S1_at--869--6191Chr11:22761823..22761847 (25 bp)
GAGGCAGAGAACACGCCTGCCGCCG
LOC_Os11g39090
OsAffx.19244.2.S1_at--678--4411Chr11:22761847..22761871 (25 bp)
GCCACCGCAGCAGCTGAAGTTGTCA
LOC_Os11g39090
OsAffx.19244.2.S1_at--161--4131Chr11:22761852..22761876 (25 bp)
CGCAGCAGCTGAAGTTGTCACCGGA
LOC_Os11g39090
OsAffx.19244.2.S1_at--755--1671Chr11:22761950..22761974 (25 bp)
AGCCGTCTGTGAAGCTGCCCATGCC
LOC_Os11g39090
OsAffx.19244.2.S1_at--147--1511Chr11:22762055..22762079 (25 bp)
AGCACCGCAAGATGCGTGAGGAGAT
LOC_Os11g39090
OsAffx.19244.2.S1_at--354--971Chr11:22762073..22762097 (25 bp)
AGGAGATGGCTGCCACCTGCAACGA
LOC_Os11g39090
Target Sequence 
GCTCGATCGATCACCGACAAACGCGCAAAATATGGACGCTTCTGCGACGAAGAAGGCGGCAGCTTCCGACGAGGCAGAGA
ACACGCCTGCCGCCGCCACCGCAGCAGCTGAAGTTGTCACCGGAGTGGACTGTGCCGACGACGCGGCGGTGGCGGCGACC
ACCGTGGACGGAGACGGCGGTGACGAGAAGCAGCAGCAGCCGTCTGTGAAGCTGCCCATGCCGCAGGAGTACGTGGACTA
CATCCTGGCATGGAAGAAGAGGCCCTTCCCTCTCCCAGACGACGGGGAGATGCTCTCGCCGGAGCACCGCAAGATGCGTG
AGGAGATGGCTGCCACCTGCAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19244.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis