Browse Element(s) Details


OsAffx.31380.1.S1_at

Description tigr:9639.m03560
TID=OsAffx.31380.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3911011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39050OsAffx.31377.1.S1_at11/1111+22748623..22749192hypothetical protein
LOC_Os11g39060OsAffx.31378.1.S1_x_at11/1111+22751541..22751948hypothetical protein
LOC_Os11g39060OsAffx.31378.1.S1_at11/1111+22751541..22751948hypothetical protein
LOC_Os11g39070OsAffx.31379.1.S1_at11/1111+22754463..22754933hypothetical protein
LOC_Os11g39079NANA11+22759453..22761440hypothetical protein
LOC_Os11g39090OsAffx.19244.2.S1_at11/1111+22761721..22762278hypothetical protein
LOC_Os11g39100OsAffx.7350.1.S1_at11/1111+22770181..22770783hypothetical protein
LOC_Os11g39110OsAffx.31380.1.S1_at11/1111+22773401..22773700hypothetical protein
LOC_Os11g39120Os.56116.1.S1_at11/1111+22782621..22783474expressed protein
LOC_Os11g39130Os.10068.1.S1_at11/1111+22789730..22793140Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39140OsAffx.19246.1.S1_at9/1111+22793952..22797397TRNA synthetase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31380.1.S1_at--1084--571Chr11:22773598..22773622 (25 bp)
ATCCAGGCGCTGGATTTTGCCACGG
LOC_Os11g39110
OsAffx.31380.1.S1_at--1036--891Chr11:22773594..22773618 (25 bp)
AGGCGCTGGATTTTGCCACGGATCT
LOC_Os11g39110
OsAffx.31380.1.S1_at--958--4571Chr11:22773592..22773616 (25 bp)
GCGCTGGATTTTGCCACGGATCTGG
LOC_Os11g39110
OsAffx.31380.1.S1_at--294--8571Chr11:22773588..22773612 (25 bp)
TGGATTTTGCCACGGATCTGGCGCC
LOC_Os11g39110
OsAffx.31380.1.S1_at--784--6531Chr11:22773586..22773610 (25 bp)
GATTTTGCCACGGATCTGGCGCCCA
LOC_Os11g39110
OsAffx.31380.1.S1_at--681--10271Chr11:22773583..22773607 (25 bp)
TTTGCCACGGATCTGGCGCCCACGG
LOC_Os11g39110
OsAffx.31380.1.S1_at--721--4691Chr11:22773532..22773556 (25 bp)
GCGGCAGCTAGTGGCGGTCGAGACG
LOC_Os11g39110
OsAffx.31380.1.S1_at--141--7731Chr11:22773479..22773503 (25 bp)
GGTGGCTGCGTTGGCGGTGACGGCG
LOC_Os11g39110
OsAffx.31380.1.S1_at--679--7371Chr11:22773463..22773487 (25 bp)
GTGACGGCGGTTTGCGACAATTGCT
LOC_Os11g39110
OsAffx.31380.1.S1_at--627--3931Chr11:22773459..22773483 (25 bp)
CGGCGGTTTGCGACAATTGCTGCTG
LOC_Os11g39110
OsAffx.31380.1.S1_at--678--10711Chr11:22773452..22773476 (25 bp)
TTGCGACAATTGCTGCTGGCGTCGG
LOC_Os11g39110
Target Sequence 
ATCCAGGCGCTGGATTTTGCCACGGATCTGGCGCCCACGGCCTCGCCTGGGCGGCTGGGGGCGGTCGCGGCAGCTAGTGG
CGGTCGAGACGGCAGCGGAGAGCTCGGCGACGGTGTTGGGGTGGCTGCGTTGGCGGTGACGGCGGTTTGCGACAATTGCT
GCTGGCGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis