Browse Element(s) Details


Os.10068.1.S1_at

Description gb:AK102376.1
DB_XREF= gi:32987585
TID=Os.10068.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.10068 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091P05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091P05, full insert sequence.
FL= gb:AK102376.1 gb:AK061397.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3913011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39100OsAffx.7350.1.S1_at11/1111+22770181..22770783hypothetical protein
LOC_Os11g39110OsAffx.31380.1.S1_at11/1111+22773401..22773700hypothetical protein
LOC_Os11g39120Os.56116.1.S1_at11/1111+22782621..22783474expressed protein
LOC_Os11g39130Os.10068.1.S1_at11/1111+22789730..22793140Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39140OsAffx.19246.1.S1_at9/1111+22793952..22797397TRNA synthetase, putative, expressed
LOC_Os11g39150OsAffx.7351.1.S1_at11/1111+22798773..22802188hypothetical protein
LOC_Os11g39150OsAffx.4334.1.S1_at1/1111+22798773..22802188hypothetical protein
LOC_Os11g39160Os.49419.1.S1_at4/1111+22804542..22812100NB-ARC domain containing protein
LOC_Os11g39170NANA11+22813491..22818491retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10068.1.S1_at--540--9031Chr11:22792488..22792512 (25 bp)
TGCACTACATGCTTTGAGGGCTGTG
LOC_Os11g39130
Os.10068.1.S1_at--557--3471Chr11:22792561..22792585 (25 bp)
CAGGGTTACCATTGCTCTTTATCAT
LOC_Os11g39130
Os.10068.1.S1_at--908--8031Chr11:22792587..22792611 (25 bp)
GGAGTAATCGTGCTTGGACTATTCA
LOC_Os11g39130
Os.10068.1.S1_at--431--8131Chr11:22792602..22792626 (25 bp)
GGACTATTCACAGTTATCGGCATTT
LOC_Os11g39130
Os.10068.1.S1_at--519--491Chr11:22792617..22792641 (25 bp)
ATCGGCATTTTCTACAGCGTCTTGG
LOC_Os11g39130
Os.10068.1.S1_at--23--10011Chr11:22792642..22792666 (25 bp)
TAGCAACCATGGTGGGTCAGCGGAT
LOC_Os11g39130
Os.10068.1.S1_at--599--7971Chr11:22792663..22792687 (25 bp)
GGATCTGGCAGAGACACTACCATAT
LOC_Os11g39130
Os.10068.1.S1_at--1155--4991Chr11:22792861..22792885 (25 bp)
GCATGTCCAACAGCTGAAGTCTCTG
LOC_Os11g39130
Os.10068.1.S1_at--152--4911Chr11:22792888..22792912 (25 bp)
GCTTCTATAATCTGTAGCCCATGAT
LOC_Os11g39130
Os.10068.1.S1_at--679--10091Chr11:22792935..22792959 (25 bp)
TAGGACTTGCGGCACTATCCAGCTG
LOC_Os11g39130
Os.10068.1.S1_at--366--5011Chr11:22792990..22793014 (25 bp)
GCAGGCGTTTCGGTTTTTAAGCAGC
LOC_Os11g39130
Target Sequence 
TGCACTACATGCTTTGAGGGCTGTGCAACGACAGCTGGAGAGTGTGGTGGTTGCTTGGGTGGTGCTGGAGAAGCAGGGTT
ACCATTGCTCTTTATCATGGGAGTAATCGTGCTTGGACTATTCACAGTTATCGGCATTTTCTACAGCGTCTTGGTAGCAA
CCATGGTGGGTCAGCGGATCTGGCAGAGACACTACCATATTCTTGCAAAACGAATGTTAACTAAGGAATATGTTGTGGAA
GATGTCGATGGCGAGCGCGCGGATTGGTGTCCGCCCCCTCTCCCTTCGGAGCATGTCCAACAGCTGAAGTCTCTGGGGCT
TCTATAATCTGTAGCCCATGATTATACCAATGATGACCTTAATTTAGGACTTGCGGCACTATCCAGCTGTACAGGAGATG
ATACAAATTAAGCGGTGAAGCAGGCGTTTCGGTTTTTAAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis