Browse Element(s) Details


OsAffx.7350.1.S1_at

Description tigr:9639.m03559
TID=OsAffx.7350.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3910011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39040OsAffx.19244.1.S1_at10/1111+22744733..22747620hypothetical protein
LOC_Os11g39050OsAffx.31377.1.S1_at11/1111+22748623..22749192hypothetical protein
LOC_Os11g39060OsAffx.31378.1.S1_x_at11/1111+22751541..22751948hypothetical protein
LOC_Os11g39060OsAffx.31378.1.S1_at11/1111+22751541..22751948hypothetical protein
LOC_Os11g39070OsAffx.31379.1.S1_at11/1111+22754463..22754933hypothetical protein
LOC_Os11g39079NANA11+22759453..22761440hypothetical protein
LOC_Os11g39090OsAffx.19244.2.S1_at11/1111+22761721..22762278hypothetical protein
LOC_Os11g39100OsAffx.7350.1.S1_at11/1111+22770181..22770783hypothetical protein
LOC_Os11g39110OsAffx.31380.1.S1_at11/1111+22773401..22773700hypothetical protein
LOC_Os11g39120Os.56116.1.S1_at11/1111+22782621..22783474expressed protein
LOC_Os11g39130Os.10068.1.S1_at11/1111+22789730..22793140Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39140OsAffx.19246.1.S1_at9/1111+22793952..22797397TRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7350.1.S1_at--783--5731Chr11:22770577..22770601 (25 bp)
GACTGGCTCTGCTCAGGTTGTCAAC
LOC_Os11g39100
OsAffx.7350.1.S1_at--608--1431Chr11:22770506..22770530 (25 bp)
AGAAGCGTAAGGTGCCCATGCCTGA
LOC_Os11g39100
OsAffx.7350.1.S1_at--877--591Chr11:22770489..22770513 (25 bp)
ATGCCTGAGAATTTCGTCGCCATGA
LOC_Os11g39100
OsAffx.7350.1.S1_at--347--9331Chr11:22770473..22770497 (25 bp)
TCGCCATGATCCTGGCACTGAAGAG
LOC_Os11g39100
OsAffx.7350.1.S1_at--63--871Chr11:22770442..22770466 (25 bp)
ATGGCCGACCTTCGAGTACCTGGAC
LOC_Os11g39100
OsAffx.7350.1.S1_at--902--8991Chr11:22770386..22770410 (25 bp)
TGAAGAGTGCTGAACGCCGCTCCAA
LOC_Os11g39100
OsAffx.7350.1.S1_at--1049--5391Chr11:22770343..22770367 (25 bp)
GAAGCTCCAGAAGGATGTCCGTGAC
LOC_Os11g39100
OsAffx.7350.1.S1_at--117--8711Chr11:22770328..22770352 (25 bp)
TGTCCGTGACGGCATCGACAAGGAT
LOC_Os11g39100
OsAffx.7350.1.S1_at--493--2911Chr11:22770309..22770333 (25 bp)
AAGGATGGCTACTATCTGGTCGATG
LOC_Os11g39100
OsAffx.7350.1.S1_at--839--691Chr11:22770287..22770311 (25 bp)
ATGAGAGTTACCTCGCTGAGTCGGC
LOC_Os11g39100
OsAffx.7350.1.S1_at--238--9151Chr11:22770258..22770282 (25 bp)
TGCGAGGCTCAGATAGACGAACTAT
LOC_Os11g39100
Target Sequence 
GACTGGCTCTGCTCAGGTTGTCAACGCCGAGTCCGCCGTCGCCGTCGCCGCCGCGGGTGGAGAAGGCGACCAGAAGCGTA
AGGTGCCCATGCCTGAGAATTTCGTCGCCATGATCCTGGCACTGAAGAGGGAGCCATGGCCGACCTTCGAGTACCTGGAC
TCCCTCTCGCCTGAGAAGCGCAGTGAGGAATTGAAGAGTGCTGAACGCCGCTCCAAGCTGGACGACGACTTGGAGAAGCT
CCAGAAGGATGTCCGTGACGGCATCGACAAGGATGGCTACTATCTGGTCGATGAGAGTTACCTCGCTGAGTCGGCCGCCT
GCGAGGCTCAGATAGACGAACTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7350.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis