Browse Element(s) Details


OsAffx.19246.1.S1_at

Description tigr:9639.m03563
TID=OsAffx.19246.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=tRNA synthetase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g391409/11TRNA synthetase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39100OsAffx.7350.1.S1_at11/1111+22770181..22770783hypothetical protein
LOC_Os11g39110OsAffx.31380.1.S1_at11/1111+22773401..22773700hypothetical protein
LOC_Os11g39120Os.56116.1.S1_at11/1111+22782621..22783474expressed protein
LOC_Os11g39130Os.10068.1.S1_at11/1111+22789730..22793140Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g39140OsAffx.19246.1.S1_at9/1111+22793952..22797397TRNA synthetase, putative, expressed
LOC_Os11g39150OsAffx.7351.1.S1_at11/1111+22798773..22802188hypothetical protein
LOC_Os11g39150OsAffx.4334.1.S1_at1/1111+22798773..22802188hypothetical protein
LOC_Os11g39160Os.49419.1.S1_at4/1111+22804542..22812100NB-ARC domain containing protein
LOC_Os11g39170NANA11+22813491..22818491retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19246.1.S1_at--794--9531NONE
TTTGCATCAAAGTGTAGAGGAAGCT
NONE
OsAffx.19246.1.S1_at--105--8191Chr11:22795031..22795052 (22 bp)
GGAAGCTTTGCCACAGGCATGGATT
LOC_Os11g39140
OsAffx.19246.1.S1_at--284--3491Chr11:22795041..22795065 (25 bp)
CAGGCATGGATTGTGGAAGGTATAA
LOC_Os11g39140
OsAffx.19246.1.S1_at--806--5271Chr11:22795056..22795080 (25 bp)
GAAGGTATAACCATAGATCAACGTG
LOC_Os11g39140
OsAffx.19246.1.S1_at--1052--7971NONE
GGATGATCCTGGAAATTGTAGCTAA
NONE
OsAffx.19246.1.S1_at--710--8251Chr11:22796367..22796695 (25 bp)
GGCAGCGAAAAGAATGCTCCTTTCT
LOC_Os11g39140
OsAffx.19246.1.S1_at--56--2891Chr11:22796900..22796924 (25 bp)
AAGGGCATTGCTGTTGACCGGTTAG
LOC_Os11g39140
OsAffx.19246.1.S1_at--80--9071Chr11:22796908..22796932 (25 bp)
TGCTGTTGACCGGTTAGTTGGGTTT
LOC_Os11g39140
OsAffx.19246.1.S1_at--572--8631Chr11:22796926..22796950 (25 bp)
TGGGTTTCAAGACCTTGGCAGTAAA
LOC_Os11g39140
OsAffx.19246.1.S1_at--690--5351Chr11:22797108..22797132 (25 bp)
GAAGACGACGAAACCGATATGTCAA
LOC_Os11g39140
OsAffx.19246.1.S1_at--1104--7071Chr11:22797128..22797152 (25 bp)
GTCAATGAACAGGAGGATTAGGTCT
LOC_Os11g39140
Target Sequence 
TTTGCATCAAAGTGTAGAGGAAGCTTTGCCACAGGCATGGATTGTGGAAGGTATAACCATAGATCAACGTGGAGGATGAT
CCTGGAAATTGTAGCTAAAGAGAAAGCCCAAGCAGCAAATGCAAGCCATGATGAGGTTGATCTTGATGAATTATTGGATG
ATCCAGAGCTTGAGAAGTTGCATGCGGAGAGAATTGCTGCTCTGAAGAAAGAGGTCGAGAAGCGTGAAGTGCTAAAAAGG
CAAGGTCATGGTGAATATAGGGAGATAACTGAAGGGGACTTCCTAGGAGAGGTCACTGGCAGCGAAAAGAATGCTCCTTT
CTTTGTCACGAAACTAGGAATCAAAACATTGCCCTGCGTGATATTGTTCAAGAAGGGCATTGCTGTTGACCGGTTAGTTG
GGTTTCAAGACCTTGGCAGTAAAGATGATTTTTCAACAAGAGCGTTGGAAAATATACTCAAGATGAAAGGTATAATCGAC
GAAAAGAAGAAGGATGAGGACGATGAAGACGACGAAACCGATATGTCAATGAACAGGAGGATTAGGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19246.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis