Browse Element(s) Details


OsAffx.31375.1.S1_x_at

Description tigr:9639.m03538
TID=OsAffx.31375.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to pyruvate decarboxylase (EC 4.1.1.1) - fava bean (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3891011/11Pyruvate decarboxylase isozyme 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38880OsAffx.7347.1.S1_at11/1111+22639595..22640956hypothetical protein
LOC_Os11g38890NANA11+22647580..22653333retrotransposon protein, putative, unclassified
LOC_Os11g38900Os.3123.1.S1_a_at11/1111+22657149..22662909YDG/SRA domain containing protein, expressed
LOC_Os11g38910OsAffx.31375.1.S1_x_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38910OsAffx.31375.1.S1_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38920Os.10043.1.S1_at11/1111+22670620..22675017TB2/DP1, HVA22 family protein, expressed
LOC_Os11g38930OsAffx.24986.1.S1_s_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.51135.1.S1_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.24713.2.S1_x_at1/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38949Os.12189.2.S1_x_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.2.S1_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949OsAffx.12746.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38970OsAffx.7348.1.S1_at10/1111+22688209..22689469hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0004737molecular_functionpyruvate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31375.1.S1_x_at--689--6251Chr11:22665746..22665770 (25 bp)
GATGGTGTACAATTGCGCCGGCGAC
LOC_Os11g38910
OsAffx.31375.1.S1_x_at--248--4491Chr11:22665762..22665786 (25 bp)
GCCGGCGACGAGACCCTTGACTGGG
LOC_Os11g38910
OsAffx.31375.1.S1_x_at--1084--6671Chr11:22665846..22666103 (25 bp)
GTTGCGGTGGTGATCGACACTGCCA
LOC_Os11g38910
OsAffx.31375.1.S1_x_at--933--4671Chr11:22665840..22666106 (25 bp)
GCGGTGGTGATCGACACTGCCATCG
LOC_Os11g38910
OsAffx.31375.1.S1_x_at--133--1991Chr11:22666097..22666121 (25 bp)
ACTGCCATCGCGACGGCACTAAGTG
LOC_Os11g38910
OsAffx.31375.1.S1_x_at--197--5111Chr11:22666112..22666136 (25 bp)
GCACTAAGTGAGAGCAAGCCCGTGT
LOC_Os11g38910
OsAffx.31375.1.S1_x_at--1049--2851Chr11:22666117..22666141 (25 bp)
AAGTGAGAGCAAGCCCGTGTATATT
LOC_Os11g38910
OsAffx.31375.1.S1_x_at--322--1491Chr11:22666124..22666148 (25 bp)
AGCAAGCCCGTGTATATTAGCGTGG
LOC_Os11g38910
OsAffx.31375.1.S1_x_at--311--4251Chr11:22666131..22666155 (25 bp)
CCGTGTATATTAGCGTGGGCTGCAA
LOC_Os11g38910
OsAffx.31375.1.S1_x_at--51--10471Chr11:22666182..22666206 (25 bp)
TTAGCCGCGAGCCAGTGCCCTTGTT
LOC_Os11g38910
OsAffx.31375.1.S1_x_at--187--4191Chr11:22666199..22666315 (25 bp)
CCCTTGTTCATCTCGCCAAGATTGA
LOC_Os11g38910
Target Sequence 
GATGGTGTACAATTGCGCCGGCGACGAGACCCTTGACTGGGGGAGAGGAGGCGCCGCGATGGTTGGAGCCGGGTTGGCGG
GGGTGGTTGTCGCGGCGGTGGTTGCGGTGGTGATCGACACTGCCATCGCGACGGCACTAAGTGAGAGCAAGCCCGTGTAT
ATTAGCGTGGGCTGCAACCTGGCGGGCCTCTCTCACCCGACGTTTAGCCGCGAGCCAGTGCCCTTGTTCATCTCGCCAAG
ATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31375.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis