Browse Element(s) Details


Os.3123.1.S1_a_at

Description gb:AF344453.1
DB_XREF= gi:13517760
GEN=SET1
TID=Os.3123.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3123 (NCBI UniGene Cluster)
DEF=Oryza sativa SET1 (SET1) mRNA, complete cds.
PROD=SET1
FL= gb:AF344453.1 gb:AK102379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3890011/11YDG/SRA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38870Os.27243.1.S1_at11/1111+22631489..22636257Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os11g38880OsAffx.7347.1.S1_at11/1111+22639595..22640956hypothetical protein
LOC_Os11g38890NANA11+22647580..22653333retrotransposon protein, putative, unclassified
LOC_Os11g38900Os.3123.1.S1_a_at11/1111+22657149..22662909YDG/SRA domain containing protein, expressed
LOC_Os11g38910OsAffx.31375.1.S1_x_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38910OsAffx.31375.1.S1_at11/1111+22665654..22666464Pyruvate decarboxylase isozyme 1, putative
LOC_Os11g38920Os.10043.1.S1_at11/1111+22670620..22675017TB2/DP1, HVA22 family protein, expressed
LOC_Os11g38930OsAffx.24986.1.S1_s_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.51135.1.S1_at11/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38930Os.24713.2.S1_x_at1/1111+22675285..22677467tRNA intron endonuclease, catalytic C-terminal domain containing protein, expressed
LOC_Os11g38949Os.12189.2.S1_x_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.2.S1_at11/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949OsAffx.12746.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed
LOC_Os11g38949Os.12189.1.S1_at2/1111+22678956..2268621740S ribosomal protein S9, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0040029biological_processregulation of gene expression, epigenetic
GO:0005634cellular_componentnucleus
GO:0042054molecular_functionhistone methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3123.1.S1_a_at--1018--4271Chr11:22661519..22661543 (25 bp)
CCTCCGATGACAGAGCTTACATATG
LOC_Os11g38900
Os.3123.1.S1_a_at--825--8591Chr11:22661548..22661572 (25 bp)
TGGTCAGAGCCAGGGTAATGTTCAA
LOC_Os11g38900
Os.3123.1.S1_a_at--10--5071Chr11:22662528..22662552 (25 bp)
GCAGCAGGGTGCATTCAGTGTTTCA
LOC_Os11g38900
Os.3123.1.S1_a_at--260--9651Chr11:22662542..22662566 (25 bp)
TCAGTGTTTCAAGATGCCATGTAAT
LOC_Os11g38900
Os.3123.1.S1_a_at--429--171Chr11:22662658..22662682 (25 bp)
ATTTAGCGTAGCATCTGAATTCCGA
LOC_Os11g38900
Os.3123.1.S1_a_at--13--8191Chr11:22662690..22662714 (25 bp)
GGAACCGTGTTACTATGTTCTTGTA
LOC_Os11g38900
Os.3123.1.S1_a_at--36--1112Chr11:22662714..22662738 (25 bp)
AGTGTAGTTGTTTCTCCTGTTTAAG
LOC_Os11g38900
Os.3123.1.S1_a_at--450--8651Chr11:22662793..22662817 (25 bp)
TGGGCTTCGCATGCCAGTCGTGCAC
LOC_Os11g38900
Os.3123.1.S1_a_at--595--5091Chr11:22662814..22662838 (25 bp)
GCACTCGCCGTATGTTTTTCTGTAA
LOC_Os11g38900
Os.3123.1.S1_a_at--1091--2952Chr11:22662843..22662867 (25 bp)
AATGGCTACATAATGCATCCTGTAA
LOC_Os11g38900
Os.3123.1.S1_a_at--1097--3071Chr11:22662866..22662890 (25 bp)
AATAATCATGGTAGTAGCTCCAGTC
LOC_Os11g38900
Target Sequence 
CCTCCGATGACAGAGCTTACATATGATTATGGTCAGAGCCAGGGTAATGTTCAACTGGGAATCAATTCTGGATGTCGGAA
GTCCAAAAACTGCTTATGTTGGTCTCGCAAGTGCAGAGGTTCCTTTGGCTAAAATGCGAACCCTGCAACAAAAACATTAA
AGCATAATCTGCCATTGCAAGAAGTAGGCGATTGTTGTAGAACTATGAAGCAGCAGGGTGCATTCAGTGTTTCAAGATGC
CATGTAATAAGGTTGGCCTTCGTCNGGATGAGAATGCAAAAGAGGGTATTTATTGCAGAAAGCATTGGCATTGTACCAAA
CTTTATTGGAATAACTAGTATTTAGCGTAGCATCTGAATTCCGAGAAGGTTGGAACCGTGTTACTATGTTCTTGTAGTGT
AGTTGTTTCTCCTGTTTAAGANAACTTTACCAACTGTAGAATGCCATGCNTATGGTTGCATCGCAAGATTTTCCTGGGCT
TCGCATGCCAGTCGTGCACTCGCCGTATGTTTTTCTGTAATATTAATGGCTACATAATGCATCCTGTAATAATCATGGTA
GTAGCTCCAGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3123.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis