Browse Element(s) Details


OsAffx.3144.1.S1_x_at

Description tigr:9631.m00524
TID=OsAffx.3144.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pollen allergen, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0601011/11Alpha-expansin 17 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05970OsAffx.4323.2.S1_s_at11/113+2957857..2958129hypothetical protein
LOC_Os03g05980Os.12189.1.S1_at10/113+2965130..296838340S ribosomal protein S9, putative, expressed
LOC_Os03g05980Os.12189.2.S1_x_at2/113+2965130..296838340S ribosomal protein S9, putative, expressed
LOC_Os03g05990Os.31992.1.S1_at5/113+2971907..2974455hypothetical protein
LOC_Os03g05990OsAffx.3017.1.S1_x_at1/113+2971907..2974455hypothetical protein
LOC_Os03g05990OsAffx.31754.1.S1_x_at1/113+2971907..2974455hypothetical protein
LOC_Os03g06000Os.20535.1.S1_at11/113+2977966..2979110Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06010OsAffx.3144.1.S1_at11/113+2982524..2983686Alpha-expansin 17 precursor, putative, expressed
LOC_Os03g06010OsAffx.3144.1.S1_x_at11/113+2982524..2983686Alpha-expansin 17 precursor, putative, expressed
LOC_Os03g06010OsAffx.8085.1.S1_x_at1/113+2982524..2983686Alpha-expansin 17 precursor, putative, expressed
LOC_Os03g06020OsAffx.24987.1.S1_at11/113+2985441..2986442Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06030NANA3+2997486..2997740hypothetical protein
LOC_Os03g06040OsAffx.12748.2.S1_at2/113+3000377..3001530Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06050OsAffx.12748.2.S1_at8/113+3005572..3006632Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3144.1.S1_x_at--369--9971Chr03:2983314..2983338 (25 bp)
TACCTGATCATGTGCGACGCCGCCG
LOC_Os03g06010
OsAffx.3144.1.S1_x_at--552--8651Chr03:2983221..2983245 (25 bp)
TGGGCTCTCCCCAGCAACAGCGGCG
LOC_Os03g06010
OsAffx.3144.1.S1_x_at--1130--9611Chr03:2982836..2982860 (25 bp)
TCAGGTTCACGATGGGAGGGTTCAA
LOC_Os03g06010
OsAffx.3144.1.S1_x_at--1085--7791Chr03:2982770..2982794 (25 bp)
GGTCGGTGAGGTCGGTGTCGGTGAA
LOC_Os03g06010
OsAffx.3144.1.S1_x_at--543--7731Chr03:2982731..2982755 (25 bp)
GGTGGATCACGCTGAACCGGAACTG
LOC_Os03g06010
OsAffx.3144.1.S1_x_at--452--8571Chr03:2982729..2982753 (25 bp)
TGGATCACGCTGAACCGGAACTGGG
LOC_Os03g06010
OsAffx.3144.1.S1_x_at--980--4551Chr03:2982704..2982728 (25 bp)
GCGCCAACTGGCAGTGCAACTCGGG
LOC_Os03g06010
OsAffx.3144.1.S1_x_at--291--8351Chr03:2982639..2982663 (25 bp)
GGCGGCCAGACGCTCTACATCTACA
LOC_Os03g06010
OsAffx.3144.1.S1_x_at--53--4411Chr03:2982635..2982659 (25 bp)
GCCAGACGCTCTACATCTACAACGT
LOC_Os03g06010
OsAffx.3144.1.S1_x_at--777--451Chr03:2982621..2982645 (25 bp)
ATCTACAACGTCGTGCCCAGCTGGT
LOC_Os03g06010
OsAffx.3144.1.S1_x_at--284--2591Chr03:2982615..2982639 (25 bp)
AACGTCGTGCCCAGCTGGTGGAGCT
LOC_Os03g06010
Target Sequence 
TACCTGATCATGTGCGACGCCGCCGCGACGCCGCAGTGGTGCAGGGCGGGCGCCGCGGTGACCATCACGGCCACCAACCT
GTGCCCGCCCAACTGGGCTCTCCCCAGCAACAGCGGCGGCTGGTGCAACCCGCCCCGCCCTCACTTCGACATGGCCGAGC
CCGCCTGGCTCCAGATCGGCATCTACAAGGCCGGCATCATCCCCGTCCTCTACCAACAGGTGAAGTGCTGGAGGCAGGGA
GGGATCAGGTTCACGATGGGAGGGTTCAACTTCTTCGAGCTGGTGCTGGTGTCGAACGTGGCGGGGAGCGGGTCGGTGAG
GTCGGTGTCGGTGAAGGGGGGAAGCACGGGGTGGATCACGCTGAACCGGAACTGGGGCGCCAACTGGCAGTGCAACTCGG
GGCTCGTCGGCCAGGCGCTCTCCTTCGCCGTCACATCCACCGGCGGCCAGACGCTCTACATCTACAACGTCGTGCCCAGC
TGGTGGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3144.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis