Browse Element(s) Details


Os.20535.1.S1_at

Description gb:AY046929.1
DB_XREF= gi:22074238
GEN=EXPA12
TID=Os.20535.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20535 (NCBI UniGene Cluster)
DEF=Oryza sativa alpha-expansin (EXPA12) mRNA, complete cds.
PROD=alpha-expansin
FL= gb:AY046929.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0600011/11Alpha-expansin 11 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05950OsAffx.3142.1.S1_at11/113+2952426..2953513expressed protein
LOC_Os03g05960NANA3+2954334..2956051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g05970OsAffx.4323.2.S1_s_at11/113+2957857..2958129hypothetical protein
LOC_Os03g05980Os.12189.1.S1_at10/113+2965130..296838340S ribosomal protein S9, putative, expressed
LOC_Os03g05980Os.12189.2.S1_x_at2/113+2965130..296838340S ribosomal protein S9, putative, expressed
LOC_Os03g05990Os.31992.1.S1_at5/113+2971907..2974455hypothetical protein
LOC_Os03g05990OsAffx.3017.1.S1_x_at1/113+2971907..2974455hypothetical protein
LOC_Os03g05990OsAffx.31754.1.S1_x_at1/113+2971907..2974455hypothetical protein
LOC_Os03g06000Os.20535.1.S1_at11/113+2977966..2979110Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06010OsAffx.3144.1.S1_at11/113+2982524..2983686Alpha-expansin 17 precursor, putative, expressed
LOC_Os03g06010OsAffx.3144.1.S1_x_at11/113+2982524..2983686Alpha-expansin 17 precursor, putative, expressed
LOC_Os03g06010OsAffx.8085.1.S1_x_at1/113+2982524..2983686Alpha-expansin 17 precursor, putative, expressed
LOC_Os03g06020OsAffx.24987.1.S1_at11/113+2985441..2986442Alpha-expansin 11 precursor, putative, expressed
LOC_Os03g06030NANA3+2997486..2997740hypothetical protein
LOC_Os03g06040OsAffx.12748.2.S1_at2/113+3000377..3001530Alpha-expansin 11 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
GO:0009831biological_processcell wall modification during multidimensional cell growth (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20535.1.S1_at--213--511Chr03:2978528..2978551 (24 bp)
ATCGTCCCCGTCAATTTCCAGAGGG
LOC_Os03g06000
Os.20535.1.S1_at--68--211Chr03:2978541..2978653 (25 bp)
ATTTCCAGAGGGTGTCGTGCACGAG
LOC_Os03g06000
Os.20535.1.S1_at--204--311Chr03:2978676..2978700 (25 bp)
ATCAACGGGAACAGCTACTTCGAGC
LOC_Os03g06000
Os.20535.1.S1_at--989--9331Chr03:2978890..2978914 (25 bp)
TCGCGCCGTCCAACTGGCAGTTCGG
LOC_Os03g06000
Os.20535.1.S1_at--1057--1211Chr03:2978908..2978932 (25 bp)
AGTTCGGCCAGACATTCACCAGCGG
LOC_Os03g06000
Os.20535.1.S1_at--142--1411Chr03:2978917..2978941 (25 bp)
AGACATTCACCAGCGGCGTGCAGTT
LOC_Os03g06000
Os.20535.1.S1_at--1083--1611Chr03:2978928..2978952 (25 bp)
AGCGGCGTGCAGTTCTACTAGCTAG
LOC_Os03g06000
Os.20535.1.S1_at--263--1231Chr03:2978938..2978962 (25 bp)
AGTTCTACTAGCTAGCGGCTCGCGC
LOC_Os03g06000
Os.20535.1.S1_at--367--4171Chr03:2979036..2979060 (25 bp)
CGCCATTTCCGTTCAATTTTTGCAT
LOC_Os03g06000
Os.20535.1.S1_at--879--8131Chr03:2979063..2979087 (25 bp)
GGAAAACTTGTCAAAAAGACCAGCT
LOC_Os03g06000
Os.20535.1.S1_at--40--2771Chr03:2979078..2979102 (25 bp)
AAGACCAGCTTATTTAGCATCATTC
LOC_Os03g06000
Target Sequence 
ATCGTCCCCGTCAATTTCCAGAGGGTGTCGTGCACGAGGAAAGGAGGGGTGAGGTTCACCATCAACGGGAACAGCTACTT
CGAGCTGGTGCTGATCACCAACGTGGNCGGGCCGGGGTCGATCAAGTCGGTGCAGATCAAGGGNACAAAGACGGGGTGGG
TGACCATGNNCCGGAACTGGGGCGCCAACTGGCNAGCCAACAACTACNTCAACANCCAGGCCATCTCCTTCTCGGTCACC
TCCACCGCCGGCAAGACGCTCGTCTTCGAGGACGTCGCGCCGTCCAACTGGCAGTTCGGCCAGACATTCACCAGCGGCGT
GCAGTTCTACTAGCTAGCGGCTCGCGCGCGCGCGCGGCGGCGCATGAGCCGCCGACGCCGTCGCGCGCTTGCCCAACGGC
GAGCGGCGCATGCCACCTGCCGCCATTTCCGTTCAATTTTTGCATTTGGAAAACTTGTCAAAAAGACCAGCTTATTTAGC
ATCATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis