Browse Element(s) Details


OsAffx.24986.1.S1_at

Description tigr:9631.m00516
TID=OsAffx.24986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AB036340 tRNA intron endonuclease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0593011/11tRNA-splicing endonuclease, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05860Os.16891.1.S1_at1/113+2921884..2922327monooxygenase, putative
LOC_Os03g05870Os.11072.1.S1_at11/113+2926464..2927396Fe-S metabolism associated domain containing protein, expressed
LOC_Os03g05880Os.16891.1.S1_at2/113+2928630..2931667FAD binding domain containing protein, expressed
LOC_Os03g05890OsAffx.12745.1.S1_at11/113+2934944..2935369hypothetical protein
LOC_Os03g05900Os.16891.1.S1_at11/113+2937423..2939509FAD binding domain containing protein, expressed
LOC_Os03g05910Os.8947.1.S1_at11/113+2940857..2943407FAD binding domain containing protein, expressed
LOC_Os03g05920Os.31992.1.S1_at11/113+2943827..2946397FAD binding domain containing protein, expressed
LOC_Os03g05930OsAffx.24986.1.S1_at11/113+2946506..2947084tRNA-splicing endonuclease, putative
LOC_Os03g05930OsAffx.24986.1.S1_s_at11/113+2946506..2947084tRNA-splicing endonuclease, putative
LOC_Os03g05940NANA3+2949649..2950047hypothetical protein
LOC_Os03g05950OsAffx.3142.1.S1_at11/113+2952426..2953513expressed protein
LOC_Os03g05960NANA3+2954334..2956051retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g05970OsAffx.4323.2.S1_s_at11/113+2957857..2958129hypothetical protein
LOC_Os03g05980Os.12189.1.S1_at10/113+2965130..296838340S ribosomal protein S9, putative, expressed
LOC_Os03g05980Os.12189.2.S1_x_at2/113+2965130..296838340S ribosomal protein S9, putative, expressed
LOC_Os03g05990Os.31992.1.S1_at5/113+2971907..2974455hypothetical protein
LOC_Os03g05990OsAffx.3017.1.S1_x_at1/113+2971907..2974455hypothetical protein
LOC_Os03g05990OsAffx.31754.1.S1_x_at1/113+2971907..2974455hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006388biological_processtRNA splicing
GO:0000214cellular_componenttRNA-intron endonuclease complex
GO:0000213molecular_functiontRNA-intron endonuclease activity
GO:0004518molecular_functionnuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24986.1.S1_at--157--551Chr03:2946912..2946936 (25 bp)
ATCCGAGATTGTCACGACCTCATGG
LOC_Os03g05930
OsAffx.24986.1.S1_at--384--6591Chr03:2946918..2946942 (25 bp)
GATTGTCACGACCTCATGGCACCAA
LOC_Os03g05930
OsAffx.24986.1.S1_at--808--5831Chr03:2946927..2946951 (25 bp)
GACCTCATGGCACCAACAGAGTTGG
LOC_Os03g05930
OsAffx.24986.1.S1_at--461--3271Chr03:2946940..2946964 (25 bp)
CAACAGAGTTGGGTGTAAACGAGAA
LOC_Os03g05930
OsAffx.24986.1.S1_at--470--5551Chr03:2946962..2946986 (25 bp)
GAAAGTGTAGATTCCTGTTTACCCT
LOC_Os03g05930
OsAffx.24986.1.S1_at--959--8751Chr03:2946967..2946991 (25 bp)
TGTAGATTCCTGTTTACCCTTGAGA
LOC_Os03g05930
OsAffx.24986.1.S1_at--234--6591Chr03:2946971..2946995 (25 bp)
GATTCCTGTTTACCCTTGAGAGTGA
LOC_Os03g05930
OsAffx.24986.1.S1_at--725--9272Chr03:2946974..2946998 (25 bp)
TCCTGTTTACCCTTGAGAGTGAGCC
LOC_Os03g05930
OsAffx.24986.1.S1_at--833--8772Chr03:2946977..2947001 (25 bp)
TGTTTACCCTTGAGAGTGAGCCTAA
LOC_Os03g05930
OsAffx.24986.1.S1_at--618--9951Chr03:2946981..2947005 (25 bp)
TACCCTTGAGAGTGAGCCTAAGAGT
LOC_Os03g05930
OsAffx.24986.1.S1_at--1018--8911Chr03:2946993..2947017 (25 bp)
TGAGCCTAAGAGTAGATGTCAGGAT
LOC_Os03g05930
Target Sequence 
ATCCGAGATTGTCACGACCTCATGGCACCAACAGAGTTGGGTGTAAACGAGAAAGTGTAGATTCCTGTTTACCCTTGAGA
GTGAGCCTAAGAGTAGATGTCAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis