Browse Element(s) Details


Os.16896.1.S1_at

Description gb:AK065118.1
DB_XREF= gi:32975136
TID=Os.16896.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16896 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001O13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001O13, full insert sequence.
FL= gb:AK065118.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3363011/11Protein kinase domain containing protein, expressed
LOC_Os09g155805/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33610Os.23748.1.A1_at3/119+19841686..19850769retrotransposon protein, putative, unclassified
LOC_Os09g33620OsAffx.30125.1.S1_at8/119+19853812..19856904F-box domain containing protein, expressed
LOC_Os09g33630Os.36979.1.S1_x_at11/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33630Os.16896.1.S1_at11/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33630OsAffx.30126.2.S1_x_at2/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33630OsAffx.30126.2.S1_at1/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33640OsAffx.30127.1.S1_at2/119+19867717..19868313expressed protein
LOC_Os09g33650OsAffx.30127.1.S1_at11/119+19874298..19875147expressed protein
LOC_Os09g33660NANA9+19876986..19877242hypothetical protein
LOC_Os09g33670Os.50184.1.S1_at11/119+19877907..19881653Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g33670Os.19059.1.S1_at11/119+19877907..19881653Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g33680Os.9105.1.S1_at11/119+19882169..19887645Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16896.1.S1_at--935--8491Chr09:19865134..19865158 (25 bp)
TGGAATTGTAACACCCATACTAGTT
LOC_Os09g33630
Os.16896.1.S1_at--183--1811Chr09:19865146..19865170 (25 bp)
ACCCATACTAGTTACTACCATGTAT
LOC_Os09g33630
Os.16896.1.S1_at--885--9972Chr09:19865161..19865185 (25 bp)
TACCATGTATGAAACGCTGACGTGC
LOC_Os09g33630
Os.16896.1.S1_at--925--2591Chr09:19865173..19865197 (25 bp)
AACGCTGACGTGCAGAAATTCTCAA
LOC_Os09g33630
Os.16896.1.S1_at--463--8191Chr09:19865204..19865228 (25 bp)
GGAAGATTTATGTGTACTCGCAACT
LOC_Os09g33630
Os.16896.1.S1_at--263--7011Chr09:19865217..19865241 (25 bp)
GTACTCGCAACTGTATGAACTGGAT
LOC_Os09g33630
Os.16896.1.S1_at--944--6592Chr09:19865239..19865263 (25 bp)
GATTGAAACCAGGATCTTATTGTTG
LOC_Os09g33630
Os.16896.1.S1_at--674--10232Chr09:19865256..19865280 (25 bp)
TATTGTTGATTGTATCTTCCACAGT
LOC_Os09g33630
Os.16896.1.S1_at--815--10152Chr09:19865268..19865292 (25 bp)
TATCTTCCACAGTTTGAGGAGGCCC
LOC_Os09g33630
Os.16896.1.S1_at--295--6852Chr09:19865749..19865773 (25 bp)
GTTTCCTGTAATTGTTTTCCTCTCT
LOC_Os09g33630
Os.16896.1.S1_at--658--10292Chr09:19865764..19865788 (25 bp)
TTTCCTCTCTGATTCAGTGAAAATA
LOC_Os09g33630
Target Sequence 
TGGAATTGTAACACCCATACTAGTTACTACCATGTATGAAACGCTGACGTGCAGAAATTCTCAAAGTTATGGAAGATTTA
TGTGTACTCGCAACTGTATGAACTGGATTGAAACCAGGATCTTATTGTTGATTGTATCTTCCACAGTTTGAGGAGGCCCT
CAGCGCTCCAAACCCCACGGAAGCTCTTGACGAACTGATTGATCCGAGCCTGCAAGGGGACTACCCCGTCGACTCGGCTC
TCAAGATTGCGTCCCTTGCANAAGTCCTGCACGCATGAGGAGCCCGGGATGAGGCCTACCATGAGATCCGTCGTCGTTGC
CCTGATGGCGCTCACAGCCAACACCGATCTTCGCGACATGGACTACCACCCTTTCTGAGGACAGGTTAACTGGACCAAGT
NTAAAAATGTAAAGTGATGTGTAAAAATGTGCAGTTAGTCANTTGATGGATGCATATCCCATTTAATTGTAGGCAAAATT
TGGGTACCTGAGGAAAGCNAAACAGAAGAATAGTTTCCTGTAATTGTTTTCCTCTCTGATTCAGTGAAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16896.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis