Browse Element(s) Details


Os.50184.1.S1_at

Description gb:AK120002.1
DB_XREF= gi:37989625
TID=Os.50184.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50184 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-H09, full insert sequence.
FL= gb:AK120002.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3367011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33620OsAffx.30125.1.S1_at8/119+19853812..19856904F-box domain containing protein, expressed
LOC_Os09g33630Os.36979.1.S1_x_at11/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33630Os.16896.1.S1_at11/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33630OsAffx.30126.2.S1_x_at2/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33630OsAffx.30126.2.S1_at1/119+19862703..19865816Protein kinase domain containing protein, expressed
LOC_Os09g33640OsAffx.30127.1.S1_at2/119+19867717..19868313expressed protein
LOC_Os09g33650OsAffx.30127.1.S1_at11/119+19874298..19875147expressed protein
LOC_Os09g33660NANA9+19876986..19877242hypothetical protein
LOC_Os09g33670Os.50184.1.S1_at11/119+19877907..19881653Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g33670Os.19059.1.S1_at11/119+19877907..19881653Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g33680Os.9105.1.S1_at11/119+19882169..19887645Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g33690Os.17433.1.S1_at11/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690Os.46223.1.S1_s_at11/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690OsAffx.15220.2.S1_s_at8/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690OsAffx.15220.1.S1_s_at7/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50184.1.S1_at--1018--9371Chr09:19878202..19878226 (25 bp)
TCGATGTAGCATGCGCGGAGGTTTC
LOC_Os09g33670
Os.50184.1.S1_at--138--3971Chr09:19878217..19878241 (25 bp)
CGGAGGTTTCGATCTCGCGAGCAGA
LOC_Os09g33670
Os.50184.1.S1_at--397--9511Chr09:19878229..19878253 (25 bp)
TCTCGCGAGCAGAATTGTGCCTATT
LOC_Os09g33670
Os.50184.1.S1_at--768--7631Chr09:19878257..19878281 (25 bp)
GGGATCGGATTAGCCCGGTCCTGTT
LOC_Os09g33670
Os.50184.1.S1_at--427--7231Chr09:19878274..19878298 (25 bp)
GTCCTGTTCGTCTTAGGCTGGGTAA
LOC_Os09g33670
Os.50184.1.S1_at--120--9151Chr09:19878326..19878350 (25 bp)
TGCGATGTTCTTTTGCTGTTATGCG
LOC_Os09g33670
Os.50184.1.S1_at--891--4731Chr09:19878340..19878364 (25 bp)
GCTGTTATGCGTCCCCAATTTGGGA
LOC_Os09g33670
Os.50184.1.S1_at--792--10831Chr09:19878359..19878383 (25 bp)
TTGGGAATTCTACTCATGCATGCAT
LOC_Os09g33670
Os.50184.1.S1_at--1136--5271Chr09:19878388..19878412 (25 bp)
GAATGGCTGAATGCACGACGTTGGT
LOC_Os09g33670
Os.50184.1.S1_at--1000--3911Chr09:19878435..19878459 (25 bp)
CTGGCTGTGGTGGTATGTTGAATCT
LOC_Os09g33670
Os.50184.1.S1_at--351--3051Chr09:19878455..19878479 (25 bp)
AATCTCAATTGGATTACTCACCCGT
LOC_Os09g33670
Target Sequence 
TCGATGTAGCATGCGCGGAGGTTTCGATCTCGCGAGCAGAATTGTGCCTATTGGGGGGATCGGATTAGCCCGGTCCTGTT
CGTCTTAGGCTGGGTAATTCGAGGGGGGAAAGAACCTGAAATTTTGCGATGTTCTTTTGCTGTTATGCGTCCCCAATTTG
GGAATTCTACTCATGCATGCATGGGTGAATGGCTGAATGCACGACGTTGGTGATTGTTCATAGTGGAATGGAACTGGCTG
TGGTGGTATGTTGAATCTCAATTGGATTACTCACCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50184.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis