Browse Element(s) Details


Os.17433.1.S1_at

Description gb:AK101420.1
DB_XREF= gi:32986629
TID=Os.17433.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17433 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033038B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033038B10, full insert sequence.
FL= gb:AK101420.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3369011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33650OsAffx.30127.1.S1_at11/119+19874298..19875147expressed protein
LOC_Os09g33660NANA9+19876986..19877242hypothetical protein
LOC_Os09g33670Os.50184.1.S1_at11/119+19877907..19881653Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g33670Os.19059.1.S1_at11/119+19877907..19881653Zinc finger, C3HC4 type family protein, expressed
LOC_Os09g33680Os.9105.1.S1_at11/119+19882169..19887645Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g33690Os.17433.1.S1_at11/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690Os.46223.1.S1_s_at11/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690OsAffx.15220.2.S1_s_at8/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690OsAffx.15220.1.S1_s_at7/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33700NANA9+19907320..19907562expressed protein
LOC_Os09g33710Os.52315.1.S1_at11/119+19908250..19914000Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g33720Os.54030.1.S1_at11/119+19917004..19919828Protein transport protein Sec61 alpha subunit isoform A, putative, expressed
LOC_Os09g33730OsAffx.30128.1.S1_s_at11/119+19920369..19921029expressed protein
LOC_Os09g33740OsAffx.6475.1.S1_at11/119+19921609..19931232Zinc finger, ZZ type family protein, expressed
LOC_Os09g33740Os.52179.1.S1_at9/119+19921609..19931232Zinc finger, ZZ type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17433.1.S1_at--511--2611Chr09:19900599..19900623 (25 bp)
AACCCTTCGTCGCATTATGAATCGG
LOC_Os09g33690
Os.17433.1.S1_at--941--3252Chr09:19900515..19900539 (25 bp)
CAAAAAAGCCAATCCTCTCCCAGTA
LOC_Os09g33690
Os.17433.1.S1_at--1005--4271Chr09:19900502..19900526 (25 bp)
CCTCTCCCAGTACAACGATTCTGAA
LOC_Os09g33690
Os.17433.1.S1_at--142--9071Chr09:19900184..19900208 (25 bp)
TGCATTACCCTGTCGCTGTCGTTAT
LOC_Os09g33690
Os.17433.1.S1_at--813--4731Chr09:19900170..19900194 (25 bp)
GCTGTCGTTATCTTTCCATCAAAAT
LOC_Os09g33690
Os.17433.1.S1_at--1026--9611Chr09:19900143..19900167 (25 bp)
TCATGTACGGACGTGTACAGGGCAC
LOC_Os09g33690
Os.17433.1.S1_at--274--2131Chr09:19900127..19900151 (25 bp)
ACAGGGCACGTAGGTGTCTGTCTAC
LOC_Os09g33690
Os.17433.1.S1_at--894--10071Chr09:19900117..19900141 (25 bp)
TAGGTGTCTGTCTACTGCATGCCTG
LOC_Os09g33690
Os.17433.1.S1_at--1058--9052Chr09:19900102..19900126 (25 bp)
TGCATGCCTGCATTTGATGACCCGG
LOC_Os09g33690
Os.17433.1.S1_at--303--3351Chr09:19900058..19900082 (25 bp)
CACGTCGACTTGTTAGGCGCAGGTT
LOC_Os09g33690
Os.17433.1.S1_at--935--8351Chr09:19900043..19900067 (25 bp)
GGCGCAGGTTTAACTTTGTTTTGTG
LOC_Os09g33690
Target Sequence 
AACCCTTCGTCGCATTATGAATCGGGAAGATATTAATCCNNAGACGTAGACTAGAAGATGAGCAACTTACTACTCTCTCC
GTCCCAAAAAAGCCAATCCTCTCCCAGTACAACGATTCTGAATTATACTAGGAGGGGTCACATTTTTAGGTTGGGTTTTT
TTTTTAAAAAAAGTATGCAGTTAATATTTTTTTTCTTTTTACTATATACGAAAGTGGAAGGTTCCAACCCTCCACGCAAT
AGCCAAAAATAATAAAAGCGACATCGTCTTCTAGAAGGAGGCCAGAGAATGTGTATGGATGTAAATGGAAAAATCGGACA
GAATCACGAACAGAGGAGATCAGAAACACCTGGAATTCAGAAAAAATGGTGAGAGTTGGCGACCAATTTGAGTTGCTGTA
CTCCTTTGTGCCACCTGCATTACCCTGTCGCTGTCGTTATCTTTCCATCAAAATGTTCATGTACGGACGTGTACAGGGCA
CGTAGGTGTCTGTCTACTGCATGCCTGCATTTGATGACCCGGGGCCCCACTCGTGTCGCCCCACGTCGACTTGTTAGGCG
CAGGTTTAACTTTGTTTTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis