Browse Element(s) Details


OsAffx.6475.1.S1_at

Description tigr:9637.m02905
TID=OsAffx.6475.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY087139 PRT1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3374011/11Zinc finger, ZZ type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33690Os.17433.1.S1_at11/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690Os.46223.1.S1_s_at11/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690OsAffx.15220.2.S1_s_at8/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33690OsAffx.15220.1.S1_s_at7/119+19894746..19903996retrotransposon protein, putative, unclassified, expressed
LOC_Os09g33700NANA9+19907320..19907562expressed protein
LOC_Os09g33710Os.52315.1.S1_at11/119+19908250..19914000Glycosyl hydrolase family 1 protein, expressed
LOC_Os09g33720Os.54030.1.S1_at11/119+19917004..19919828Protein transport protein Sec61 alpha subunit isoform A, putative, expressed
LOC_Os09g33730OsAffx.30128.1.S1_s_at11/119+19920369..19921029expressed protein
LOC_Os09g33740OsAffx.6475.1.S1_at11/119+19921609..19931232Zinc finger, ZZ type family protein, expressed
LOC_Os09g33740Os.52179.1.S1_at9/119+19921609..19931232Zinc finger, ZZ type family protein, expressed
LOC_Os09g33750NANA9+19932715..19937200retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g33760NANA9+19938391..19938945retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g33770OsAffx.17988.1.S1_at11/119+19940056..19940697Protein transport protein Sec61 alpha subunit isoform 1, putative
LOC_Os09g33780Os.5192.1.S1_at9/119+19943043..19948238expressed protein
LOC_Os09g33790Os.20359.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33790OsAffx.6476.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33800Os.9057.1.S1_a_at11/119+19955242..19957444expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0000151cellular_componentubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6475.1.S1_at--486--7911Chr09:19929826..19929850 (25 bp)
GGTTGCGTGATTTCAATCCTGCACC
LOC_Os09g33740
OsAffx.6475.1.S1_at--598--4931Chr09:19930452..19930476 (25 bp)
GCTTGTCTCATTTGCCAGGAACTTT
LOC_Os09g33740
OsAffx.6475.1.S1_at--198--3551Chr09:19930486..19930509 (24 bp)
CATCGGTCCTGAATTGTGGCCATGT
LOC_Os09g33740
OsAffx.6475.1.S1_at--519--7551Chr09:19930501..19930609 (25 bp)
GTGGCCATGTTTACTGCATGCCATG
LOC_Os09g33740
OsAffx.6475.1.S1_at--401--9011Chr09:19930637..19930661 (25 bp)
TGAATGCCAATTTTGTGGAGCTCCA
LOC_Os09g33740
OsAffx.6475.1.S1_at--177--4211Chr09:19930666..19930690 (25 bp)
CCGCTGAACCTACAGTATGCTCAAA
LOC_Os09g33740
OsAffx.6475.1.S1_at--55--2051Chr09:19930699..19930723 (25 bp)
ACTTTCTGAAACATCGCTTCGAAGA
LOC_Os09g33740
OsAffx.6475.1.S1_at--561--5511Chr09:19930745..19930769 (25 bp)
GAAAAGTTCAGGTGTTCCAAGCAGG
LOC_Os09g33740
OsAffx.6475.1.S1_at--997--1331Chr09:19930799..19930823 (25 bp)
AGAGATATTGCATACCCACGTTGGG
LOC_Os09g33740
OsAffx.6475.1.S1_at--270--5591Chr09:19931091..19931115 (25 bp)
GAAATGCTTCATGACAGGATCTACT
LOC_Os09g33740
OsAffx.6475.1.S1_at--72--6411Chr09:19931108..19931132 (25 bp)
GATCTACTGCAGAGGGACGCTTTGA
LOC_Os09g33740
Target Sequence 
GGTTGCGTGATTTCAATCCTGCACCCTGGTAAGGGAAATGCAGATGAAGTTGACGGGATCAGATCGGAAGATGTGGCTTG
TCTCATTTGCCAGGAACTTTTGTTTGACCCATCGGTCCTGAATTGTGGCCATGTTTACTGCATGCCATGTTTAACATCTG
TGGGTGGAGAGGAACTTGAATGCCAATTTTGTGGAGCTCCACATCCCGCTGAACCTACAGTATGCTCAAATCTGAAGAAC
TTTCTGAAACATCGCTTCGAAGAACTGTATAACTCAAGGCAAGAGAAAAGTTCAGGTGTTCCAAGCAGGAAGGAAGGCAC
TCGCAAAGGGAAACCTTCAGAGATATTGCATACCCACGTTGGGGTGGGCTGTGATGGTTGCGGGGTCTTCCCAATCCAAG
GGAGAAGATACTCATGCAAGGAGTGTGAGGCACCAGGTTTAGATCTGTGCGAGAAATGCTTCATGACAGGATCTACTGCA
GAGGGACGCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis