Browse Element(s) Details


OsAffx.6476.1.S1_at

Description tigr:9637.m02910
TID=OsAffx.6476.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3379010/11SnRK1-interacting protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33740OsAffx.6475.1.S1_at11/119+19921609..19931232Zinc finger, ZZ type family protein, expressed
LOC_Os09g33740Os.52179.1.S1_at9/119+19921609..19931232Zinc finger, ZZ type family protein, expressed
LOC_Os09g33750NANA9+19932715..19937200retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g33760NANA9+19938391..19938945retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g33770OsAffx.17988.1.S1_at11/119+19940056..19940697Protein transport protein Sec61 alpha subunit isoform 1, putative
LOC_Os09g33780Os.5192.1.S1_at9/119+19943043..19948238expressed protein
LOC_Os09g33790Os.20359.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33790OsAffx.6476.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33800Os.9057.1.S1_a_at11/119+19955242..19957444expressed protein
LOC_Os09g33810Os.12712.1.S1_at11/119+19960623..19963923Ankyrin repeat domain protein 2, putative, expressed
LOC_Os09g33820Os.14901.1.A1_a_at11/119+19964721..19969670phospholipase A1, putative, expressed
LOC_Os09g33830OsAffx.30129.1.S1_at11/119+19970022..19974776anthocyanin-related membrane protein 1, putative, expressed
LOC_Os09g33840OsAffx.19826.2.S1_at4/119+19977286..19979138hypothetical protein
LOC_Os09g33840OsAffx.20913.1.A1_at1/119+19977286..19979138hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6476.1.S1_at--865--3771Chr09:19950555..19950579 (25 bp)
CTCGACAAGGCCACCGGGATGACGC
LOC_Os09g33790
OsAffx.6476.1.S1_at--436--7251NONE
GTCCCCTGGTACCATGCCAATAGAA
NONE
OsAffx.6476.1.S1_at--386--5271Chr09:19952242..19952266 (25 bp)
GAATGCTGAGCTTTTATGCACCAGG
LOC_Os09g33790
OsAffx.6476.1.S1_at--56--5611Chr09:19952788..19952812 (25 bp)
GACAATGGAACTGTAACCGTGGTTT
LOC_Os09g33790
OsAffx.6476.1.S1_at--1023--1771Chr09:19952803..19952827 (25 bp)
ACCGTGGTTTATCGAGTGATTCTGA
LOC_Os09g33790
OsAffx.6476.1.S1_at--896--931Chr09:19952829..19953007 (25 bp)
AGGAACAGACGGAGAGGCATACAGA
LOC_Os09g33790
OsAffx.6476.1.S1_at--331--9871Chr09:19953002..19953026 (25 bp)
TACAGAGAGGCTACTGGCACGGCAC
LOC_Os09g33790
OsAffx.6476.1.S1_at--665--551Chr09:19953025..19953049 (25 bp)
ACCAGTGCACGAGGGCCGTAACGAC
LOC_Os09g33790
OsAffx.6476.1.S1_at--548--9811Chr09:19953043..19953067 (25 bp)
TAACGACGATGCTGTTGCGGCTGCG
LOC_Os09g33790
OsAffx.6476.1.S1_at--145--5371Chr09:19953071..19953095 (25 bp)
GAAGCAGCGTTCTGCAAAGCCTGCG
LOC_Os09g33790
OsAffx.6476.1.S1_at--233--2371Chr09:19953086..19953110 (25 bp)
AAAGCCTGCGCACGGTTTGGTTTCG
LOC_Os09g33790
Target Sequence 
CTCGACAAGGCCACCGGGATGACGCGCCCGCTCGTCGAGATCCTCCGGGACCTCAACAAGCGCGTCCCCGACAAGATCAT
CGACCCCGACACCAACACCGTCCCCTGGTACCATGCCAATAGAATGCTGAGCTTTTATGCACCAGGTTGGTGTGGAGAAG
TTCGCAATGTTATTTATTCTGACAATGGAACTGTAACCGTGGTTTATCGAGTGATTCTGAGAGGAACAGACGGAGAGGCA
TACAGAGAGGCTACTGGCACGGCACCAGTGCACGAGGGCCGTAACGACGATGCTGTTGCGGCTGCGGAGGAAGCAGCGTT
CTGCAAAGCCTGCGCACGGTTTGGTTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis