Browse Element(s) Details


Os.14901.1.A1_a_at

Description gb:AK060173.1
DB_XREF= gi:32970191
TID=Os.14901.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.14901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-311-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-311-G09, full insert sequence.
FL= gb:AK060173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3382011/11phospholipase A1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33770OsAffx.17988.1.S1_at11/119+19940056..19940697Protein transport protein Sec61 alpha subunit isoform 1, putative
LOC_Os09g33780Os.5192.1.S1_at9/119+19943043..19948238expressed protein
LOC_Os09g33790Os.20359.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33790OsAffx.6476.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33800Os.9057.1.S1_a_at11/119+19955242..19957444expressed protein
LOC_Os09g33810Os.12712.1.S1_at11/119+19960623..19963923Ankyrin repeat domain protein 2, putative, expressed
LOC_Os09g33820Os.14901.1.A1_a_at11/119+19964721..19969670phospholipase A1, putative, expressed
LOC_Os09g33830OsAffx.30129.1.S1_at11/119+19970022..19974776anthocyanin-related membrane protein 1, putative, expressed
LOC_Os09g33840OsAffx.19826.2.S1_at4/119+19977286..19979138hypothetical protein
LOC_Os09g33840OsAffx.20913.1.A1_at1/119+19977286..19979138hypothetical protein
LOC_Os09g33850OsAffx.30130.1.S1_at11/119+19979959..19985742Phosphatidylethanolamine-binding protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_s_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860Os.6990.1.S1_at4/119+19992273..19995387Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004607molecular_functionphosphatidylcholine-sterol O-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14901.1.A1_a_at--252--7631Chr09:19968081..19968105 (25 bp)
GGGACATCTTACGATACTCCATATG
LOC_Os09g33820
Os.14901.1.A1_a_at--470--6791Chr09:19968492..19968512 (21 bp)
GTTTGTTACGGCTCTGAAAGCTCCC
LOC_Os09g33820
Os.14901.1.A1_a_at--45--5571Chr09:19968503..19968527 (25 bp)
GAAAGCTCCCCAATTGGAGATCTGT
LOC_Os09g33820
Os.14901.1.A1_a_at--13--6051Chr09:19968519..19968543 (25 bp)
GAGATCTGTCAGAAGTGTGCCACAC
LOC_Os09g33820
Os.14901.1.A1_a_at--1136--7271Chr09:19968535..19968650 (25 bp)
GTGCCACACAATGCCAGTGTACACT
LOC_Os09g33820
Os.14901.1.A1_a_at--967--8231Chr09:19968666..19968690 (25 bp)
GGCACAGTTCCTATTGAGTCAACTA
LOC_Os09g33820
Os.14901.1.A1_a_at--642--1791Chr09:19969267..19969291 (25 bp)
ACCGAGGGCTGCTTTGCGACGAGAA
LOC_Os09g33820
Os.14901.1.A1_a_at--859--4631Chr09:19969346..19969370 (25 bp)
GCGTCGGTTGTCCAAGTCCAAAGTG
LOC_Os09g33820
Os.14901.1.A1_a_at--89--2331Chr09:19969365..19969389 (25 bp)
AAAGTGACAGACTTTGCACCATCAT
LOC_Os09g33820
Os.14901.1.A1_a_at--1118--2631Chr09:19969427..19969451 (25 bp)
AACCATCACAATCTCTTCAAGGCAG
LOC_Os09g33820
Os.14901.1.A1_a_at--121--8991Chr09:19969549..19969573 (25 bp)
TGAACCCTACCATTCGTAGCTGAAA
LOC_Os09g33820
Target Sequence 
GGGACATCTTACGATACTCCATATGATGTTTGTTACGGCTCTGAAAGCTCCCCAATTGGAGATCTGTCAGAAGTGTGCCA
CACAATGCCAGTGTACACTTATGTGGATGGAGATGGCACAGTTCCTATTGAGTCAACTATGGCTGATGGATTTGCAGCCA
AGGAAAGAGTTGGCATCGAGGCCGACCACCGAGGGCTGCTTTGCGACGAGAATGTGTTTGAGCTTCTGAAGAAATGGCTC
GGCGTGAAGGAAGAAAGCACACGGCGGCGTCGGTTGTCCAAGTCCAAAGTGACAGACTTTGCACCATCATAATGAAAGTA
CTAATCAAGTCAAGGTGCTCAAAACAAAACCATCACAATCTCTTCAAGGCAGCCATTATTTTTTGGGCTCTTCACTTGAA
GAGAAGATGAATATAGCGAAACACTTGTGTTTAAAATGTTACTTGTTATTCCGGAAGGGGAAGATGATATGAACCCTACC
ATTCGTAGCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14901.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis