Browse Element(s) Details


Os.6990.1.S1_at

Description gb:CA767435
DB_XREF= gi:27547775
DB_XREF=AF53-Rpf_09_M05_T7_023.ab1
CLONE=C0003365
TID=Os.6990.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.6990 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_180632.1 (A.thaliana) putative protein kinase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g338604/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33820Os.14901.1.A1_a_at11/119+19964721..19969670phospholipase A1, putative, expressed
LOC_Os09g33830OsAffx.30129.1.S1_at11/119+19970022..19974776anthocyanin-related membrane protein 1, putative, expressed
LOC_Os09g33840OsAffx.19826.2.S1_at4/119+19977286..19979138hypothetical protein
LOC_Os09g33840OsAffx.20913.1.A1_at1/119+19977286..19979138hypothetical protein
LOC_Os09g33850OsAffx.30130.1.S1_at11/119+19979959..19985742Phosphatidylethanolamine-binding protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_s_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860Os.6990.1.S1_at4/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33870Os.5580.1.S1_at9/119+19996685..19999169U1 small nuclear ribonucleoprotein 70 kDa, putative, expressed
LOC_Os09g33876Os.49366.1.S1_at11/119+20000609..20006080ARI, RING finger protein, putative, expressed
LOC_Os09g33882Os.55230.1.S1_at11/119+20006443..20007191expressed protein
LOC_Os09g33882Os.55230.1.S1_x_at11/119+20006443..20007191expressed protein
LOC_Os09g33890OsAffx.30131.1.S1_at11/119+20008662..20010318hypothetical protein
LOC_Os09g33900Os.54331.1.S1_at11/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33900Os.54331.2.S1_at10/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33910Os.53863.1.S1_at11/119+20015107..20018910Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os09g33920OsAffx.17990.1.S1_at11/119+20020280..20022942expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6990.1.S1_at--553--851NONE
ATGGCTTGACATGCTTTTGGTGTGT
NONE
Os.6990.1.S1_at--717--8291NONE
GGCTTGACATGCTTTTGGTGTGTGC
NONE
Os.6990.1.S1_at--197--3631NONE
CTTGACATGCTTTTGGTGTGTGCCT
NONE
Os.6990.1.S1_at--511--10751NONE
TTGACATGCTTTTGGTGTGTGCCTA
NONE
Os.6990.1.S1_at--946--8951NONE
TGACATGCTTTTGGTGTGTGCCTAC
NONE
Os.6990.1.S1_at--392--5671NONE
GACATGCTTTTGGTGTGTGCCTACG
NONE
Os.6990.1.S1_at--1134--2091NONE
ACATGCTTTTGGTGTGTGCCTACGT
NONE
Os.6990.1.S1_at--27--631Chr09:19994973..19995323 (25 bp)
ATGCTTTTGGTGTGTGCCTACGTGA
LOC_Os09g33860
Os.6990.1.S1_at--613--4891Chr09:19994975..19995325 (25 bp)
GCTTTTGGTGTGTGCCTACGTGAGA
LOC_Os09g33860
Os.6990.1.S1_at--658--3671Chr09:19995307..19995326 (20 bp)
CTTTTGGTGTGTGCCTACGTGAGAG
LOC_Os09g33860
Os.6990.1.S1_at--408--9192Chr09:19995313..19995337 (25 bp)
TGCCTACGTGAGAGGATGATGGTTC
LOC_Os09g33860
Target Sequence 
ATGGCTTGACATGCTTTTGGTGTGTGCCTACGTGAGAGGATGATGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis