Browse Element(s) Details


OsAffx.17990.1.S1_at

Description tigr:9637.m02923
TID=OsAffx.17990.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC004450 expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3392011/11expressed protein
LOC_Os08g055801/11Major intrinsic protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33860OsAffx.17989.1.S1_s_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860Os.6990.1.S1_at4/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33870Os.5580.1.S1_at9/119+19996685..19999169U1 small nuclear ribonucleoprotein 70 kDa, putative, expressed
LOC_Os09g33876Os.49366.1.S1_at11/119+20000609..20006080ARI, RING finger protein, putative, expressed
LOC_Os09g33882Os.55230.1.S1_at11/119+20006443..20007191expressed protein
LOC_Os09g33882Os.55230.1.S1_x_at11/119+20006443..20007191expressed protein
LOC_Os09g33890OsAffx.30131.1.S1_at11/119+20008662..20010318hypothetical protein
LOC_Os09g33900Os.54331.1.S1_at11/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33900Os.54331.2.S1_at10/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33910Os.53863.1.S1_at11/119+20015107..20018910Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os09g33920OsAffx.17990.1.S1_at11/119+20020280..20022942expressed protein
LOC_Os09g33930Os.10844.1.S1_at11/119+20023466..20026650Protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit, putative, expressed
LOC_Os09g33940OsAffx.30132.1.S1_x_at11/119+20031485..20036873expressed protein
LOC_Os09g33950OsAffx.6477.1.S1_s_at11/119+20039126..20039900expressed protein
LOC_Os09g33960Os.23840.1.S1_at11/119+20042980..20051383expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17990.1.S1_at--526--2111Chr09:20021735..20021759 (25 bp)
ACATGGTCAACAACAAGGAAGCCCC
LOC_Os09g33920
OsAffx.17990.1.S1_at--987--3651Chr09:20021760..20021784 (25 bp)
CTTACTCCATCTCGGCAGCAATTGC
LOC_Os09g33920
OsAffx.17990.1.S1_at--471--5051Chr09:20021774..20021798 (25 bp)
GCAGCAATTGCCTCAAGATATCCAT
LOC_Os09g33920
OsAffx.17990.1.S1_at--755--9711Chr09:20021786..20021810 (25 bp)
TCAAGATATCCATTTCTATGCCGGG
LOC_Os09g33920
OsAffx.17990.1.S1_at--1067--8011Chr09:20021816..20021840 (25 bp)
GGAGGAGCTTCACACTGTTCTGTCA
LOC_Os09g33920
OsAffx.17990.1.S1_at--788--3871Chr09:20021830..20021854 (25 bp)
CTGTTCTGTCAGTGATTCAGGAGGA
LOC_Os09g33920
OsAffx.17990.1.S1_at--32--8891Chr09:20021855..20021879 (25 bp)
TGAGGTGGACACATCATCAGGTGTA
LOC_Os09g33920
OsAffx.17990.1.S1_at--724--3471Chr09:20021872..20021896 (25 bp)
CAGGTGTAGCACTAGAGTTCTGTGA
LOC_Os09g33920
OsAffx.17990.1.S1_at--440--3671Chr09:20021903..20021927 (25 bp)
CTTTCTGGATGGTTGCAGTAGCCAA
LOC_Os09g33920
OsAffx.17990.1.S1_at--788--5192Chr09:20021935..20021959 (25 bp)
GCAATATTTGCCATGAAACCTCTTC
LOC_Os09g33920
OsAffx.17990.1.S1_at--1016--2991Chr09:20022051..20022075 (25 bp)
AATGAGATCCCTTATTCTGCAAGCT
LOC_Os09g33920
Target Sequence 
ACATGGTCAACAACAAGGAAGCCCCCTTACTCCATCTCGGCAGCAATTGCCTCAAGATATCCATTTCTATGCCGGGGAAT
GGGAGGAGCTTCACACTGTTCTGTCAGTGATTCAGGAGGATGAGGTGGACACATCATCAGGTGTAGCACTAGAGTTCTGT
GAAGATGACTTTCTGGATGGTTGCAGTAGCCAAGATGCAAGCAATATTTGCCATGAAACCTCTTCAAGGCGATCAAGAAA
ACTATCAGGAAGCCGTGCATGGGAGAGGGGGAATGAGACTACCACAGGAGATGGTGGATATGATATACTGTTAGTCAATG
AGATCCCTTATTCTGCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis