Browse Element(s) Details


Os.23840.1.S1_at

Description gb:AK106676.1
DB_XREF= gi:32991885
TID=Os.23840.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A08, full insert sequence.
FL= gb:AK106676.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3396011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33910Os.53863.1.S1_at11/119+20015107..20018910Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os09g33920OsAffx.17990.1.S1_at11/119+20020280..20022942expressed protein
LOC_Os09g33930Os.10844.1.S1_at11/119+20023466..20026650Protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit, putative, expressed
LOC_Os09g33940OsAffx.30132.1.S1_x_at11/119+20031485..20036873expressed protein
LOC_Os09g33950OsAffx.6477.1.S1_s_at11/119+20039126..20039900expressed protein
LOC_Os09g33960Os.23840.1.S1_at11/119+20042980..20051383expressed protein
LOC_Os09g33970Os.8804.1.S1_at11/119+20053363..20057190expressed protein
LOC_Os09g33980Os.8886.1.S1_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33980Os.8886.1.S2_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33986Os.3709.1.S1_s_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986OsAffx.6478.1.S1_x_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986Os.3709.1.S1_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33992Os.49347.1.S1_at11/119+20070072..20073169expressed protein
LOC_Os09g34000Os.47333.1.S1_at11/119+20073334..20076317expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23840.1.S1_at--742--10571Chr09:20049472..20049496 (25 bp)
TTCTGGTCTAACTGTGGTCAAGTCT
LOC_Os09g33960
Os.23840.1.S1_at--523--7831Chr09:20049487..20049511 (25 bp)
GGTCAAGTCTACATGTCCAAATCTT
LOC_Os09g33960
Os.23840.1.S1_at--915--4751Chr09:20049521..20049541 (21 bp)
GCTGCAAACCTGCATATTTGGGCAA
LOC_Os09g33960
Os.23840.1.S1_at--82--10851Chr09:20049976..20049998 (23 bp)
TTGGGCAATGCTTTTAGCTCCAAGC
LOC_Os09g33960
Os.23840.1.S1_at--873--5311Chr09:20050215..20050239 (25 bp)
GAAGGTCAGCAAGGCTTGTTCCAAA
LOC_Os09g33960
Os.23840.1.S1_at--757--2551Chr09:20051102..20051126 (25 bp)
AACTGCCATCTTAGTCAGGTTCTAA
LOC_Os09g33960
Os.23840.1.S1_at--515--2391Chr09:20051173..20051197 (25 bp)
AAACTTGTCTTGTTCTGGTTCGTTG
LOC_Os09g33960
Os.23840.1.S1_at--402--10171Chr09:20051232..20051256 (25 bp)
TATACACCAGTACACAGTCACCGAG
LOC_Os09g33960
Os.23840.1.S1_at--179--7111Chr09:20051248..20051272 (25 bp)
GTCACCGAGCACCAAACGTTTTCTT
LOC_Os09g33960
Os.23840.1.S1_at--853--7971Chr09:20051310..20051334 (25 bp)
GGATGCAATGCTGAGCCCTTTACAC
LOC_Os09g33960
Os.23840.1.S1_at--524--1211Chr09:20051353..20051377 (25 bp)
AGTTTTCGGATAGCTCTGAACCTGC
LOC_Os09g33960
Target Sequence 
TTCTGGTCTAACTGTGGTCAAGTCTACATGTCCAAATCTTAGATCTGCAGCTGCAAACCTGCATATTTGGGCAATGCTTT
TAGCTCCAAGCATGATGCAGAGTCAGCACAGAGTTCTGATGAGCTTGAGGAGTTAGAGAGCAAGACACCATCAAGTTTTG
AACCTCCCAGAAACATACTACTTAGCTTAAGAAGTGCTTCTGCTAAACAGACCAAACCAACATTACCTAGAAGGTCAGCA
AGGCTTGTTCCAAAGTAATCGCTTTAAATGCAAGGAGAGATACATGGCAAAGAATCAATAGCTTAACTGCCATCTTAGTC
AGGTTCTAAGAGGAGGCTGAAGGATAGAAATACCATTGTTAGCAAGCTAGTTTCCAAACTTGTCTTGTTCTGGTTCGTTG
ATTCTTTATTGGTAGCAGCTGAGTAGCTTAGTTCTATACACCAGTACACAGTCACCGAGCACCAAACGTTTTCTTCTTTT
TCTTCTTCTGTTGTAGTACATCTGTTATACCTGGATGCAATGCTGAGCCCTTTACACCGTGTACAAACAATTCATAGTTT
TCGGATAGCTCTGAACCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis