Browse Element(s) Details


OsAffx.6477.1.S1_s_at

Description tigr:9637.m02926
TID=OsAffx.6477.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3395011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33900Os.54331.1.S1_at11/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33900Os.54331.2.S1_at10/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33910Os.53863.1.S1_at11/119+20015107..20018910Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os09g33920OsAffx.17990.1.S1_at11/119+20020280..20022942expressed protein
LOC_Os09g33930Os.10844.1.S1_at11/119+20023466..20026650Protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit, putative, expressed
LOC_Os09g33940OsAffx.30132.1.S1_x_at11/119+20031485..20036873expressed protein
LOC_Os09g33950OsAffx.6477.1.S1_s_at11/119+20039126..20039900expressed protein
LOC_Os09g33960Os.23840.1.S1_at11/119+20042980..20051383expressed protein
LOC_Os09g33970Os.8804.1.S1_at11/119+20053363..20057190expressed protein
LOC_Os09g33980Os.8886.1.S1_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33980Os.8886.1.S2_at11/119+20059116..20066102bromodomain protein 103, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6477.1.S1_s_at--286--2591Chr09:20039628..20039652 (25 bp)
AACGCGGGCCTCATCGAGCCGGAGT
LOC_Os09g33950
OsAffx.6477.1.S1_s_at--993--3931Chr09:20039481..20039505 (25 bp)
CGGAACCGGGAGCTCAACAAGCACG
LOC_Os09g33950
OsAffx.6477.1.S1_s_at--1043--1491Chr09:20039462..20039486 (25 bp)
AGCACGCGCGGCTCGGGTGCCAGGT
LOC_Os09g33950
OsAffx.6477.1.S1_s_at--726--4371Chr09:20039390..20039414 (25 bp)
CCAAGCCATGGGACATCCCGTAATT
LOC_Os09g33950
OsAffx.6477.1.S1_s_at--1132--791Chr09:20039383..20039407 (25 bp)
ATGGGACATCCCGTAATTGCGAGCC
LOC_Os09g33950
OsAffx.6477.1.S1_s_at--412--7631Chr09:20039381..20039405 (25 bp)
GGGACATCCCGTAATTGCGAGCCGC
LOC_Os09g33950
OsAffx.6477.1.S1_s_at--366--5671Chr09:20039379..20039403 (25 bp)
GACATCCCGTAATTGCGAGCCGCCG
LOC_Os09g33950
OsAffx.6477.1.S1_s_at--80--4231Chr09:20039357..20039381 (25 bp)
CCGCTGCGATGGTGATGTGAGACTT
LOC_Os09g33950
OsAffx.6477.1.S1_s_at--1001--6231Chr09:20039350..20039374 (25 bp)
GATGGTGATGTGAGACTTCCTTTCC
LOC_Os09g33950
OsAffx.6477.1.S1_s_at--1004--8611Chr09:20039348..20039372 (25 bp)
TGGTGATGTGAGACTTCCTTTCCCC
LOC_Os09g33950
OsAffx.6477.1.S1_s_at--1101--8351Chr09:20039310..20039334 (25 bp)
GGCGGGTGCGTTCGTGCCGCGCCAA
LOC_Os09g33950
Target Sequence 
AACGCGGGCCTCATCGAGCCGGAGTCCCACCGCCTCGAGGAGATCGACGCCTGCTCCGCCGAGTGCGAGGTCCACATCGC
GCAGGAGTGGCTCGACAAGCTCCCCCCTCCTTCCTACGAGGAGCGCTACGTCCTCACCCGCGCGTCCCGGAACCGGGAGC
TCAACAAGCACGCGCGGCTCGGGTGCCAGGTCGTGCTCACACCGGAGCTCCAGGGGATGGTCGTCGCCGTTCCGGAGCCC
AAGCCATGGGACATCCCGTAATTGCGAGCCGCCGCTGCGATGGTGATGTGAGACTTCCTTTCCCCCACCGTCTCCCTCGG
CGGGTGCGTTCGTGCCGCGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6477.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis