Browse Element(s) Details


Os.8804.1.S1_at

Description gb:AK102371.1
DB_XREF= gi:32987580
TID=Os.8804.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8804 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033091L10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033091L10, full insert sequence.
FL= gb:AK102371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3397011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33940OsAffx.30132.1.S1_x_at11/119+20031485..20036873expressed protein
LOC_Os09g33950OsAffx.6477.1.S1_s_at11/119+20039126..20039900expressed protein
LOC_Os09g33960Os.23840.1.S1_at11/119+20042980..20051383expressed protein
LOC_Os09g33970Os.8804.1.S1_at11/119+20053363..20057190expressed protein
LOC_Os09g33980Os.8886.1.S1_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33980Os.8886.1.S2_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33986Os.3709.1.S1_s_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986OsAffx.6478.1.S1_x_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986Os.3709.1.S1_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33992Os.49347.1.S1_at11/119+20070072..20073169expressed protein
LOC_Os09g34000Os.47333.1.S1_at11/119+20073334..20076317expressed protein
LOC_Os09g34010Os.17874.1.S1_at11/119+20077712..20082152Translation initiation factor IF-2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8804.1.S1_at--75--431Chr09:20056660..20056684 (25 bp)
ATCTTCTTGTTTCAGACTTCTCCGA
LOC_Os09g33970
Os.8804.1.S1_at--681--5191Chr09:20056710..20056734 (25 bp)
GAATTGCGGCCATTCATGGTTGCTC
LOC_Os09g33970
Os.8804.1.S1_at--1055--3491Chr09:20056724..20056748 (25 bp)
CATGGTTGCTCCTGGAATGGCACAT
LOC_Os09g33970
Os.8804.1.S1_at--1036--691Chr09:20056747..20056771 (25 bp)
ATGAGATGCCGCCAGCTGAACAAGA
LOC_Os09g33970
Os.8804.1.S1_at--654--3131Chr09:20056820..20056844 (25 bp)
CAATCCTGCGTTGGTTTTCCTGGAA
LOC_Os09g33970
Os.8804.1.S1_at--531--3791Chr09:20056851..20056875 (25 bp)
CTCCCGTGGGTTGACTATGGTGACA
LOC_Os09g33970
Os.8804.1.S1_at--29--8951Chr09:20056907..20056931 (25 bp)
TGACTGATTCAACCCAAAGCACCAA
LOC_Os09g33970
Os.8804.1.S1_at--768--771Chr09:20056977..20057001 (25 bp)
ATGTGCTTTCCTGTCTCTATGATGA
LOC_Os09g33970
Os.8804.1.S1_at--1155--7071Chr09:20057017..20057041 (25 bp)
GTCAATCATTGTATCACCTTCACAC
LOC_Os09g33970
Os.8804.1.S1_at--65--10511Chr09:20057035..20057059 (25 bp)
TTCACACTCTCAAGCAACAATCATC
LOC_Os09g33970
Os.8804.1.S1_at--282--8291Chr09:20057093..20057117 (25 bp)
GGCATACATGTATAGCTGATCCACC
LOC_Os09g33970
Target Sequence 
ATCTTCTTGTTTCAGACTTCTCCGACACAACACCATCACTCCCCCCTGAAGAATTGCGGCCATTCATGGTTGCTCCTGGA
ATGGCACATGAGATGCCGCCAGCTGAACAAGAACTGGGGATTGAGGTCAGACCCCGTGCCCCCCGTGAAGTTGCAGGGCG
CAATCCTGCGTTGGTTTTCCTGGAATCACTGCTCCCGTGGGTTGACTATGGTGACAATCATCATGACGAAAATGACCAAA
ACAATGATGACTGATTCAACCCAAAGCACCAAGNGGCATGGATGCCTAGTTAGCAGAACAAGACTTAAATTGCACCCATG
TGCTTTCCTGTCTCTATGATGATTAACACAAATTGCTGTCAATCATTGTATCACCTTCACACTCTCAAGCAACAATCATC
AGAAACTAGTGCTCTAGNACTTTTCATGGTTTCGGCATACATGTATAGCTGATCCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis