Browse Element(s) Details


OsAffx.6478.1.S1_x_at

Description tigr:9637.m02930
TID=OsAffx.6478.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Proteasome A-type and B-type, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3398611/11Proteasome A-type and B-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33960Os.23840.1.S1_at11/119+20042980..20051383expressed protein
LOC_Os09g33970Os.8804.1.S1_at11/119+20053363..20057190expressed protein
LOC_Os09g33980Os.8886.1.S1_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33980Os.8886.1.S2_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33986Os.3709.1.S1_s_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986OsAffx.6478.1.S1_x_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986Os.3709.1.S1_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33992Os.49347.1.S1_at11/119+20070072..20073169expressed protein
LOC_Os09g34000Os.47333.1.S1_at11/119+20073334..20076317expressed protein
LOC_Os09g34010Os.17874.1.S1_at11/119+20077712..20082152Translation initiation factor IF-2, putative, expressed
LOC_Os09g34020NANA9+20082610..20082858expressed protein
LOC_Os09g34030NANA9+20083937..20084414expressed protein
LOC_Os09g34040Os.9589.1.S1_at11/119+20086132..20090090TBC domain containing protein, expressed
LOC_Os09g34050NANA9+20090882..20091714hypothetical protein
LOC_Os09g34060Os.54250.1.S1_at11/119+20093715..20098128Transcription factor RF2a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6478.1.S1_x_at--587--271Chr09:20067540..20067564 (25 bp)
ATATGGCTCAACTTTGCGATACAAG
LOC_Os09g33986
OsAffx.6478.1.S1_x_at--546--6531Chr09:20067452..20067476 (25 bp)
GATTTCCAGGAGATTTTGCGCTATT
LOC_Os09g33986
OsAffx.6478.1.S1_x_at--798--5211Chr09:20067336..20067446 (25 bp)
GAATTAACCCTGTCCGATCATATGT
LOC_Os09g33986
OsAffx.6478.1.S1_x_at--488--6291Chr09:20067309..20067333 (25 bp)
GATGATGGAAACTCCTTGGGTCCCA
LOC_Os09g33986
OsAffx.6478.1.S1_x_at--240--10831Chr09:20067294..20067318 (25 bp)
TTGGGTCCCAAGGAGGTCCATAGCT
LOC_Os09g33986
OsAffx.6478.1.S1_x_at--1083--9231Chr09:20067278..20067302 (25 bp)
TCCATAGCTACCTGACGAGAGTGAT
LOC_Os09g33986
OsAffx.6478.1.S1_x_at--173--5151Chr09:20067242..20067266 (25 bp)
GCAACAAGTTTGATCCCCTCTGGAA
LOC_Os09g33986
OsAffx.6478.1.S1_x_at--459--3771Chr09:20067225..20067249 (25 bp)
CTCTGGAACTCCCTTGTAATTGGTG
LOC_Os09g33986
OsAffx.6478.1.S1_x_at--414--10231Chr09:20067047..20067071 (25 bp)
TTTGAGGAAAACCACATTGCCACTG
LOC_Os09g33986
OsAffx.6478.1.S1_x_at--162--71Chr09:20067032..20067056 (25 bp)
ATTGCCACTGGGTTTGGGAACCATA
LOC_Os09g33986
OsAffx.6478.1.S1_x_at--850--3071Chr09:20066997..20067021 (25 bp)
AATACTTCGTACTGAATGGCGCGAG
LOC_Os09g33986
Target Sequence 
ATATGGCTCAACTTTGCGATACAAGAGCGTGGAGCGCATTAAGGCTGTTGGTAAGCATAGCCTTATTGGAGCAAGTGGGG
AGTTCAGTGATTTCCAGGAGATTTTGCGCTATTTGGATGAATTAACCCTGTCCGATCATATGTGGGATGATGGAAACTCC
TTGGGTCCCAAGGAGGTCCATAGCTACCTGACGAGAGTGATGTACAACAGGCGCAACAAGTTTGATCCCCTCTGGAACTC
CCTTGTAATTGGTGGGGTGAAAAAGGGTCCAAAGGGTGAAGAGAAATATCTTGGCATGGTTAACATGATTGGTACACACT
TTGAGGAAAACCACATTGCCACTGGGTTTGGGAACCATATGGCAATCCCAATACTTCGTACTGAATGGCGCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6478.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis