Browse Element(s) Details


Os.8886.1.S1_at

Description gb:AK110315.1
DB_XREF= gi:32995524
TID=Os.8886.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-164-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-164-C02, full insert sequence.
FL= gb:AK110315.1 gb:AK099978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3398011/11bromodomain protein 103, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33940OsAffx.30132.1.S1_x_at11/119+20031485..20036873expressed protein
LOC_Os09g33950OsAffx.6477.1.S1_s_at11/119+20039126..20039900expressed protein
LOC_Os09g33960Os.23840.1.S1_at11/119+20042980..20051383expressed protein
LOC_Os09g33970Os.8804.1.S1_at11/119+20053363..20057190expressed protein
LOC_Os09g33980Os.8886.1.S1_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33980Os.8886.1.S2_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33986Os.3709.1.S1_s_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986OsAffx.6478.1.S1_x_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986Os.3709.1.S1_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33992Os.49347.1.S1_at11/119+20070072..20073169expressed protein
LOC_Os09g34000Os.47333.1.S1_at11/119+20073334..20076317expressed protein
LOC_Os09g34010Os.17874.1.S1_at11/119+20077712..20082152Translation initiation factor IF-2, putative, expressed
LOC_Os09g34020NANA9+20082610..20082858expressed protein
LOC_Os09g34030NANA9+20083937..20084414expressed protein
LOC_Os09g34040Os.9589.1.S1_at11/119+20086132..20090090TBC domain containing protein, expressed
LOC_Os09g34050NANA9+20090882..20091714hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8886.1.S1_at--96--1451Chr09:20063219..20063243 (25 bp)
AGAAGCTCTTGTGCACATTTTTGGG
LOC_Os09g33980
Os.8886.1.S1_at--338--2611Chr09:20063245..20063269 (25 bp)
AAGCTAGGAGAACAACCCCGTCAAT
LOC_Os09g33980
Os.8886.1.S1_at--1016--9171Chr09:20063278..20063302 (25 bp)
TGCCTCAGTTTCATCTTTGGTGGGA
LOC_Os09g33980
Os.8886.1.S1_at--231--3391Chr09:20063410..20063434 (25 bp)
CAGCTTAGGGCTGTGCTATTGACTT
LOC_Os09g33980
Os.8886.1.S1_at--1016--5691Chr09:20063430..20063454 (25 bp)
GACTTTGTTGAATGAGCTGCCATCC
LOC_Os09g33980
Os.8886.1.S1_at--1053--6791Chr09:20063464..20063488 (25 bp)
GTTTTGTTGCTAGGAACCTCGTCAG
LOC_Os09g33980
Os.8886.1.S1_at--510--7331Chr09:20063516..20063540 (25 bp)
GTGCTTCCATATTTTCTTCTCGTAA
LOC_Os09g33980
Os.8886.1.S1_at--751--9971Chr09:20063700..20063724 (25 bp)
TACCTGCATGCACTGTTTGAGTCAT
LOC_Os09g33980
Os.8886.1.S1_at--894--6091Chr09:20063718..20063742 (25 bp)
GAGTCATTGCTCTCATTTCAAATGG
LOC_Os09g33980
Os.8886.1.S1_at--455--2851Chr09:20063772..20063796 (25 bp)
AAGTCTTCTGTTGATCTTCCCAAAG
LOC_Os09g33980
Os.8886.1.S1_at--688--7991Chr09:20063810..20063834 (25 bp)
GGATGGTCCCAAACTTTCAGAGCTA
LOC_Os09g33980
Target Sequence 
AGAAGCTCTTGTGCACATTTTTGGGGAAGCTAGGAGAACAACCCCGTCAATACTGTACTTGCCTCAGTTTCATCTTTGGT
GGGATACGGCACATGAACAGCTTAGGGCTGTGCTATTGACTTTGTTGAATGAGCTGCCATCCAACCTTCCAGTTTTGTTG
CTAGGAACCTCGTCAGTGGCCTTNGGTGACCTTGAAGAAGAGTGTGCTTCCATATTTTCTTCTCGTAATGTATATGAAGT
GGATCAACCAAGTGATGATGATAGAATGAGATACCTGCATGCACTGTTTGAGTCATTGCTCTCATTTCAAATGGAAGAGT
CTAGGAGTAAGTCTAAAGACCAGAAGTCTTCTGTTGATCTTCCCAAAGCACCAAAGGAAGTGGATGGTCCCAAACTTTCA
GAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis