Browse Element(s) Details


Os.49347.1.S1_at

Description gb:AK102157.1
DB_XREF= gi:32987366
TID=Os.49347.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49347 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086F18, full insert sequence.
FL= gb:AK102157.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3399211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33960Os.23840.1.S1_at11/119+20042980..20051383expressed protein
LOC_Os09g33970Os.8804.1.S1_at11/119+20053363..20057190expressed protein
LOC_Os09g33980Os.8886.1.S1_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33980Os.8886.1.S2_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33986Os.3709.1.S1_s_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986OsAffx.6478.1.S1_x_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986Os.3709.1.S1_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33992Os.49347.1.S1_at11/119+20070072..20073169expressed protein
LOC_Os09g34000Os.47333.1.S1_at11/119+20073334..20076317expressed protein
LOC_Os09g34010Os.17874.1.S1_at11/119+20077712..20082152Translation initiation factor IF-2, putative, expressed
LOC_Os09g34020NANA9+20082610..20082858expressed protein
LOC_Os09g34030NANA9+20083937..20084414expressed protein
LOC_Os09g34040Os.9589.1.S1_at11/119+20086132..20090090TBC domain containing protein, expressed
LOC_Os09g34050NANA9+20090882..20091714hypothetical protein
LOC_Os09g34060Os.54250.1.S1_at11/119+20093715..20098128Transcription factor RF2a, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49347.1.S1_at--600--8271Chr09:20071064..20071088 (25 bp)
GGCATTTTAGACTGACCCACTTGGA
LOC_Os09g33992
Os.49347.1.S1_at--930--511Chr09:20070482..20070506 (25 bp)
ATCGAGGTTTTCCATAGCCAATCAG
LOC_Os09g33992
Os.49347.1.S1_at--122--8771Chr09:20070445..20070469 (25 bp)
TGTAGTTCAGATCAGCAAGCCTTTG
LOC_Os09g33992
Os.49347.1.S1_at--855--2651Chr09:20070429..20070453 (25 bp)
AAGCCTTTGACTATATGATACCTGC
LOC_Os09g33992
Os.49347.1.S1_at--664--6611Chr09:20070401..20070425 (25 bp)
GTTGGCATTCACTGATCCTACAAGT
LOC_Os09g33992
Os.49347.1.S1_at--251--3731Chr09:20070384..20070408 (25 bp)
CTACAAGTTGCATCTATACCACCTG
LOC_Os09g33992
Os.49347.1.S1_at--273--7791Chr09:20070353..20070377 (25 bp)
GGTCCAAGTTGGTGAAGCTTCTTTC
LOC_Os09g33992
Os.49347.1.S1_at--1097--3671Chr09:20070333..20070357 (25 bp)
CTTTCAGTTCATTCGGCATTCAGGT
LOC_Os09g33992
Os.49347.1.S1_at--295--291Chr09:20070248..20070272 (25 bp)
ATAGATCTGTGCCTGCAACATAGCA
LOC_Os09g33992
Os.49347.1.S1_at--748--211Chr09:20070215..20070239 (25 bp)
ATTTGTTCTGCAATGTTCAACGACG
LOC_Os09g33992
Os.49347.1.S1_at--382--2091Chr09:20070189..20070213 (25 bp)
ACATATCCTCTGTAGTCTGTACCAC
LOC_Os09g33992
Target Sequence 
GGCATTTTAGACTGACCCACTTGGAGTTTTCTTTTGGGATGAGAATTCTTTGAAGCTTACTTGGAATATCTTTACTGCAG
ATGTCGTCAATCAGCTGCCAAACAGTCAGAACAGGAACTGATGAGTTTTTCAGTTCCTTGTGACATGAGCACCAAACGTG
ATGAAGAACCATGGGCGAAATCATTTCTGGCACACATGAATGAGAAGATCAAGCAATGCAATCATGTCTGGGCATCAGTT
CGGATGGAGATCGAGGTTTTCCATAGCCAATCAGGACTCATTGTTTTGTAGTTCAGATCAGCAAGCCTTTGACTATATGA
TACCTGCAAAGTTGGCATTCACTGATCCTACAAGTTGCATCTATACCACCTGTAAAATGGTCCAAGTTGGTGAAGCTTCT
TTCAGTTCATTCGGCATTCAGGTGGAATCAAGGAGGCAACGATGAATAGAGATATATATCATGATAAATTGATGATCGCA
TATATAGATCTGTGCCTGCAACATAGCAGAGAGATAATTTGTTCTGCAATGTTCAACGACGAACATATCCTCTGTAGTCT
GTACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis