Browse Element(s) Details


Os.3709.1.S1_s_at

Description gb:AB026568.1
DB_XREF= gi:8671511
GEN=OsPBG1
TID=Os.3709.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3709 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsPBG1 mRNA for beta 7 subunit of 20S proteasome, complete cds.
PROD=beta 7 subunit of 20S proteasome
FL= gb:AB026568.1 gb:AK103975.1 gb:AK104212.1 gb:AK071380.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3398611/11Proteasome A-type and B-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33960Os.23840.1.S1_at11/119+20042980..20051383expressed protein
LOC_Os09g33970Os.8804.1.S1_at11/119+20053363..20057190expressed protein
LOC_Os09g33980Os.8886.1.S1_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33980Os.8886.1.S2_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33986Os.3709.1.S1_s_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986OsAffx.6478.1.S1_x_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986Os.3709.1.S1_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33992Os.49347.1.S1_at11/119+20070072..20073169expressed protein
LOC_Os09g34000Os.47333.1.S1_at11/119+20073334..20076317expressed protein
LOC_Os09g34010Os.17874.1.S1_at11/119+20077712..20082152Translation initiation factor IF-2, putative, expressed
LOC_Os09g34020NANA9+20082610..20082858expressed protein
LOC_Os09g34030NANA9+20083937..20084414expressed protein
LOC_Os09g34040Os.9589.1.S1_at11/119+20086132..20090090TBC domain containing protein, expressed
LOC_Os09g34050NANA9+20090882..20091714hypothetical protein
LOC_Os09g34060Os.54250.1.S1_at11/119+20093715..20098128Transcription factor RF2a, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005839cellular_componentproteasome core complex (sensu Eukaryota)
GO:0008233molecular_functionpeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3709.1.S1_s_at--876--5971Chr09:20067086..20067198 (25 bp)
GAGAAATATCTTGGCATGGTTAACA
LOC_Os09g33986
Os.3709.1.S1_s_at--438--7891Chr09:20067069..20067093 (25 bp)
GGTTAACATGATTGGTACACACTTT
LOC_Os09g33986
Os.3709.1.S1_s_at--811--6591Chr09:20067060..20067084 (25 bp)
GATTGGTACACACTTTGAGGAAAAC
LOC_Os09g33986
Os.3709.1.S1_s_at--1159--6151Chr09:20067044..20067068 (25 bp)
GAGGAAAACCACATTGCCACTGGGT
LOC_Os09g33986
Os.3709.1.S1_s_at--1081--3311Chr09:20067035..20067059 (25 bp)
CACATTGCCACTGGGTTTGGGAACC
LOC_Os09g33986
Os.3709.1.S1_s_at--509--8171Chr09:20067016..20067040 (25 bp)
GGAACCATATGGCAATCCCAATACT
LOC_Os09g33986
Os.3709.1.S1_s_at--309--3191Chr09:20066998..20067022 (25 bp)
CAATACTTCGTACTGAATGGCGCGA
LOC_Os09g33986
Os.3709.1.S1_s_at--6--2971Chr09:20066983..20067007 (25 bp)
AATGGCGCGAGGACATGACATTTGA
LOC_Os09g33986
Os.3709.1.S1_s_at--103--7591Chr09:20066723..20066747 (25 bp)
GGGCTTCGCTGCCTTTGAAAATCCG
LOC_Os09g33986
Os.3709.1.S1_s_at--522--8771Chr09:20066714..20066738 (25 bp)
TGCCTTTGAAAATCCGGCCCAGGGT
LOC_Os09g33986
Os.3709.1.S1_s_at--12--4271Chr09:20066701..20066725 (25 bp)
CCGGCCCAGGGTGCTGTAGGATCAT
LOC_Os09g33986
Target Sequence 
GAGAAATATCTTGGCATGGTTAACATGATTGGTACACACTTTGAGGAAAACCACATTGCCACTGGGTTTGGGAACCATAT
GGCAATCCCAATACTTCGTACTGAATGGCGCGAGGACATGACATTTGAGGAAGCTGTCAAGCTTGTTGAGAAGTGCTTGC
TTGTCCTGCTGTACCGTGACCGATCATCTATTAACAAGTTCCAGATTGCCAAGATCACAACTGAGGGAGCGACCATCTAC
CCGCCATACTCATTGAAGACTTACTGGGGCTTCGCTGCCTTTGAAAATCCGGCCCAGGGTGCTGTAGGATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3709.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis