Browse Element(s) Details


Os.8886.1.S2_at

Description gb:AK099978.1
DB_XREF= gi:32985187
TID=Os.8886.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-164-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129B19, full insert sequence.
FL= gb:AK110315.1 gb:AK099978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3398011/11bromodomain protein 103, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33940OsAffx.30132.1.S1_x_at11/119+20031485..20036873expressed protein
LOC_Os09g33950OsAffx.6477.1.S1_s_at11/119+20039126..20039900expressed protein
LOC_Os09g33960Os.23840.1.S1_at11/119+20042980..20051383expressed protein
LOC_Os09g33970Os.8804.1.S1_at11/119+20053363..20057190expressed protein
LOC_Os09g33980Os.8886.1.S1_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33980Os.8886.1.S2_at11/119+20059116..20066102bromodomain protein 103, putative, expressed
LOC_Os09g33986Os.3709.1.S1_s_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986OsAffx.6478.1.S1_x_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33986Os.3709.1.S1_at11/119+20066479..20069004Proteasome A-type and B-type family protein, expressed
LOC_Os09g33992Os.49347.1.S1_at11/119+20070072..20073169expressed protein
LOC_Os09g34000Os.47333.1.S1_at11/119+20073334..20076317expressed protein
LOC_Os09g34010Os.17874.1.S1_at11/119+20077712..20082152Translation initiation factor IF-2, putative, expressed
LOC_Os09g34020NANA9+20082610..20082858expressed protein
LOC_Os09g34030NANA9+20083937..20084414expressed protein
LOC_Os09g34040Os.9589.1.S1_at11/119+20086132..20090090TBC domain containing protein, expressed
LOC_Os09g34050NANA9+20090882..20091714hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8886.1.S2_at--520--5591Chr09:20065531..20065555 (25 bp)
GACAATCCACCAACTGAATTACCAG
LOC_Os09g33980
Os.8886.1.S2_at--1073--3031Chr09:20065570..20065594 (25 bp)
AATCCTGAACCCATGGTGACTGACA
LOC_Os09g33980
Os.8886.1.S2_at--409--2211Chr09:20065592..20065616 (25 bp)
ACAACGGTGAAAACGCGGCCATGCC
LOC_Os09g33980
Os.8886.1.S2_at--661--9071Chr09:20065617..20065641 (25 bp)
TGCTAGCGACGACATACCTGAACAA
LOC_Os09g33980
Os.8886.1.S2_at--738--5411Chr09:20065653..20065677 (25 bp)
GAAGCGACGCTTCATGGAACTCACC
LOC_Os09g33980
Os.8886.1.S2_at--493--2991Chr09:20065866..20065890 (25 bp)
AATGTACATTCTCTTTGCCACAAAG
LOC_Os09g33980
Os.8886.1.S2_at--1076--3351Chr09:20065923..20065947 (25 bp)
CACCCTGCTTCCATGATGTAAGAAA
LOC_Os09g33980
Os.8886.1.S2_at--445--7051Chr09:20065948..20065972 (25 bp)
GTAACAAACTACCAGATGCTCAGTG
LOC_Os09g33980
Os.8886.1.S2_at--1094--7111Chr09:20065974..20065998 (25 bp)
GTCAGTGACACAGTTTTGCCATGGA
LOC_Os09g33980
Os.8886.1.S2_at--99--8771Chr09:20065999..20066023 (25 bp)
TGTTTGTAGCCAGCCTTGTAGATTA
LOC_Os09g33980
Os.8886.1.S2_at--827--6271Chr09:20066062..20066086 (25 bp)
GATGTACCTCTCTTTGCACAAATAT
LOC_Os09g33980
Target Sequence 
GACAATCCACCAACTGAATTACCAGAATTACCGGAACTAAATCCTGAACCCATGGTGACTGACAACGGTGAAAACGCGGC
CATGCCTGCTAGCGACGACATACCTGAACAACTGGAAGTCGTGAAGCGACGCTTCATGGAACTCACCACAGGCTATGGCG
TGCCNCAGCTCGAAAGGCTTTGCNCCCGGGTAATGAAAGGCATGATAGAATTGNGCGGTAAAGAAAGCAACGNGGATCAT
AGGCGGTTAGTCGTTAGGTATTTGTTGACATTTGTTGNGAACAGCGACAATTTTTAACTCGGAACGGTAATAAGATATTA
AGATTNTTGTTCCCCAATGTACATTCTCTTTGCCACAAAGAATAGTAGTGGAACGCCCCCTATGAGAGTCACCACCCTGC
TTCCATGATGTAAGAAAGTAACAAACTACCAGATGCTCAGTGTGTCAGTGACACAGTTTTGCCATGGATGTTTGTAGCCA
GCCTTGTAGATTAAATCCTGATCAATTTCAGCATCTTGTAATGTGATGGATGATGTACCTCTCTTTGCACAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8886.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis