Browse Element(s) Details


Os.53863.1.S1_at

Description gb:AK100474.1
DB_XREF= gi:32985683
TID=Os.53863.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53863 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023093N16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093N16, full insert sequence.
FL= gb:AK100474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3391011/11Calcium-dependent protein kinase, isoform AK1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33860OsAffx.17989.1.S1_s_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860Os.6990.1.S1_at4/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33870Os.5580.1.S1_at9/119+19996685..19999169U1 small nuclear ribonucleoprotein 70 kDa, putative, expressed
LOC_Os09g33876Os.49366.1.S1_at11/119+20000609..20006080ARI, RING finger protein, putative, expressed
LOC_Os09g33882Os.55230.1.S1_at11/119+20006443..20007191expressed protein
LOC_Os09g33882Os.55230.1.S1_x_at11/119+20006443..20007191expressed protein
LOC_Os09g33890OsAffx.30131.1.S1_at11/119+20008662..20010318hypothetical protein
LOC_Os09g33900Os.54331.1.S1_at11/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33900Os.54331.2.S1_at10/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33910Os.53863.1.S1_at11/119+20015107..20018910Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os09g33920OsAffx.17990.1.S1_at11/119+20020280..20022942expressed protein
LOC_Os09g33930Os.10844.1.S1_at11/119+20023466..20026650Protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit, putative, expressed
LOC_Os09g33940OsAffx.30132.1.S1_x_at11/119+20031485..20036873expressed protein
LOC_Os09g33950OsAffx.6477.1.S1_s_at11/119+20039126..20039900expressed protein
LOC_Os09g33960Os.23840.1.S1_at11/119+20042980..20051383expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0009738biological_processabscisic acid mediated signaling
GO:0004672molecular_functionprotein kinase activity
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53863.1.S1_at--16--6091Chr09:20016289..20016313 (25 bp)
GAGTACCTACCTAAAGCTTTCAAGT
LOC_Os09g33910
Os.53863.1.S1_at--275--631Chr09:20016216..20016240 (25 bp)
ATGCTTTAGGTGATGAACTGGGCCC
LOC_Os09g33910
Os.53863.1.S1_at--1064--2551Chr09:20016201..20016225 (25 bp)
AACTGGGCCCTACTGAGCAAGTGGT
LOC_Os09g33910
Os.53863.1.S1_at--703--8591Chr09:20015534..20015558 (25 bp)
TGGTCGCATTAGCTATCAGGAGTTT
LOC_Os09g33910
Os.53863.1.S1_at--391--2271Chr09:20015477..20015501 (25 bp)
AAATGCTTCCCGACGATACTCAAAA
LOC_Os09g33910
Os.53863.1.S1_at--877--2331Chr09:20015455..20015479 (25 bp)
AAAGCAAATTTCAGCTCCCTCAGTC
LOC_Os09g33910
Os.53863.1.S1_at--1079--3791Chr09:20015441..20015465 (25 bp)
CTCCCTCAGTCGTAAGCTGTGCAAA
LOC_Os09g33910
Os.53863.1.S1_at--233--6751Chr09:20015243..20015267 (25 bp)
GTTCATCAAGCAGCGAGCCCTATAG
LOC_Os09g33910
Os.53863.1.S1_at--113--4311Chr09:20015225..20015249 (25 bp)
CCTATAGCATCGTCCCTTGTAATGG
LOC_Os09g33910
Os.53863.1.S1_at--631--4211Chr09:20015135..20015159 (25 bp)
CCGACATGCAATCCACTTACCAAAT
LOC_Os09g33910
Os.53863.1.S1_at--748--6651Chr09:20015110..20015134 (25 bp)
GTTGATGTTTTACTACTTTGCCAAA
LOC_Os09g33910
Target Sequence 
GAGTACCTACCTAAAGCTTTCAAGTTCTTCGACAAAGATGGTAATGGTTTCATTGAAATGGAGGAGTTGATGGATGCTTT
AGGTGATGAACTGGGCCCTACTGAGCAAGTGGTTAAAGATATTATTCGAGACATTGACACTGATAAGGATGGTCGCATTA
GCTATCAGGAGTTTGAATCAATGATGATATCTGGATCAGACTGGAGAAATGCTTCCCGACGATACTCAAAAGCAAATTTC
AGCTCCCTCAGTCGTAAGCTGTGCAAAGGAAATTCATGAAACAGAGGAGGATCTGAGCAACAGTTACTTACTGAGTGCAT
CAAGCAATCAACTAAAAACAAAGCATCAGTGGACAGCCTAAAATATAAAACCAGATTACTGGGTAGAGGACATCAGCAGG
GTGAAAGGAGATTTTGTATCTCAGTTGCATAGATGACAAGGTTCATCAAGCAGCGAGCCCTATAGCATCGTCCCTTGTAA
TGGAATCAAGACATTCCATATCTAGGATATATATTCATGACTTAGCATAGGCACATGTAAGGGAAGCGCCGACATGCAAT
CCACTTACCAAATGTTGATGTTTTACTACTTTGCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53863.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis