Browse Element(s) Details


Os.54331.1.S1_at

Description gb:AK106812.1
DB_XREF= gi:32992021
TID=Os.54331.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54331 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-C11, full insert sequence.
FL= gb:AK106812.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3390011/11FAD dependent oxidoreductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33860OsAffx.17989.1.S1_s_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860Os.6990.1.S1_at4/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33870Os.5580.1.S1_at9/119+19996685..19999169U1 small nuclear ribonucleoprotein 70 kDa, putative, expressed
LOC_Os09g33876Os.49366.1.S1_at11/119+20000609..20006080ARI, RING finger protein, putative, expressed
LOC_Os09g33882Os.55230.1.S1_at11/119+20006443..20007191expressed protein
LOC_Os09g33882Os.55230.1.S1_x_at11/119+20006443..20007191expressed protein
LOC_Os09g33890OsAffx.30131.1.S1_at11/119+20008662..20010318hypothetical protein
LOC_Os09g33900Os.54331.1.S1_at11/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33900Os.54331.2.S1_at10/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33910Os.53863.1.S1_at11/119+20015107..20018910Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os09g33920OsAffx.17990.1.S1_at11/119+20020280..20022942expressed protein
LOC_Os09g33930Os.10844.1.S1_at11/119+20023466..20026650Protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit, putative, expressed
LOC_Os09g33940OsAffx.30132.1.S1_x_at11/119+20031485..20036873expressed protein
LOC_Os09g33950OsAffx.6477.1.S1_s_at11/119+20039126..20039900expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0016491molecular_functionoxidoreductase activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.54331.1.S1_at--475--6311Chr09:20016731..20016755 (25 bp)
GATGACCATTTATCTGGAGGCCCAA
LOC_Os09g33900
Os.54331.1.S1_at--843--10531Chr09:20016757..20016781 (25 bp)
TTCAGATCCTCAAGCGTCAAATTAC
LOC_Os09g33900
Os.54331.1.S1_at--280--2251Chr09:20016775..20016799 (25 bp)
AAATTACCGCTGTTGTCTTTGTCCA
LOC_Os09g33900
Os.54331.1.S1_at--508--7151Chr09:20016789..20016813 (25 bp)
GTCTTTGTCCATCTTGTGGAACATC
LOC_Os09g33900
Os.54331.1.S1_at--1022--8891Chr09:20016814..20016838 (25 bp)
TGAGTATATTTATCCATCTCCTCCA
LOC_Os09g33900
Os.54331.1.S1_at--16--5851Chr09:20016858..20016882 (25 bp)
GACCTTCATCGGCAAATGCTTCACA
LOC_Os09g33900
Os.54331.1.S1_at--1081--971Chr09:20016928..20016952 (25 bp)
AGGTTCTCTGCAACTTACTCCAAGT
LOC_Os09g33900
Os.54331.1.S1_at--960--1131Chr09:20016950..20016974 (25 bp)
AGTGCCTTCTTTTTGAACTTATTCA
LOC_Os09g33900
Os.54331.1.S1_at--485--1131Chr09:20016992..20017016 (25 bp)
AGTCTGGATCGAACAATCTCTCCGA
LOC_Os09g33900
Os.54331.1.S1_at--866--4071Chr09:20017014..20017038 (25 bp)
CGAGCGAAACGTTTGGAGCCCTATC
LOC_Os09g33900
Os.54331.1.S1_at--233--1671Chr09:20017030..20017054 (25 bp)
AGCCCTATCGGCATTCTTGAGCCAA
LOC_Os09g33900
Target Sequence
GATGACCATTTATCTGGAGGCCCAACTTCAGATCCTCAAGCGTCAAATTACCGCTGTTGTCTTTGTCCATCTTGTGGAAC
ATCTGAGTATATTTATCCATCTCCTCCACCGGTAAATTCTNGGCAACGACCTTCATCGGCAAATGCTTCACAGTGAAGAA
GTACACCACATTTGAAGAAAATAAGAATAGTAGCAGCAGGTTCTCTGCAACTTACTCCAAGTGCCTTCTTTTTGAACTTA
TTCATGGCTGAGAATTGCATCAGTCTGGATCGAACAATCTCTCCGAGCGAAACGTTTGGAGCCCTATCGGCATTCTTGAG
CCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis