Browse Element(s) Details


Os.49366.1.S1_at

Description gb:AK106673.1
DB_XREF= gi:32991882
TID=Os.49366.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A03, full insert sequence.
FL= gb:AK106673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3387611/11ARI, RING finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33840OsAffx.19826.2.S1_at4/119+19977286..19979138hypothetical protein
LOC_Os09g33840OsAffx.20913.1.A1_at1/119+19977286..19979138hypothetical protein
LOC_Os09g33850OsAffx.30130.1.S1_at11/119+19979959..19985742Phosphatidylethanolamine-binding protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_s_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860Os.6990.1.S1_at4/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33870Os.5580.1.S1_at9/119+19996685..19999169U1 small nuclear ribonucleoprotein 70 kDa, putative, expressed
LOC_Os09g33876Os.49366.1.S1_at11/119+20000609..20006080ARI, RING finger protein, putative, expressed
LOC_Os09g33882Os.55230.1.S1_at11/119+20006443..20007191expressed protein
LOC_Os09g33882Os.55230.1.S1_x_at11/119+20006443..20007191expressed protein
LOC_Os09g33890OsAffx.30131.1.S1_at11/119+20008662..20010318hypothetical protein
LOC_Os09g33900Os.54331.1.S1_at11/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33900Os.54331.2.S1_at10/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33910Os.53863.1.S1_at11/119+20015107..20018910Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os09g33920OsAffx.17990.1.S1_at11/119+20020280..20022942expressed protein
LOC_Os09g33930Os.10844.1.S1_at11/119+20023466..20026650Protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49366.1.S1_at--697--5491Chr09:20005549..20005573 (25 bp)
GAACATCGCAGGAGCGCTCAGGCGA
LOC_Os09g33876
Os.49366.1.S1_at--607--9251Chr09:20005611..20005635 (25 bp)
TCCTCTACGAACTCATGCAACATGT
LOC_Os09g33876
Os.49366.1.S1_at--534--2311Chr09:20005691..20005715 (25 bp)
AAAGGAACACCTTCTCACTGGGATT
LOC_Os09g33876
Os.49366.1.S1_at--1091--3631Chr09:20005701..20005725 (25 bp)
CTTCTCACTGGGATTCTGGTCGAAC
LOC_Os09g33876
Os.49366.1.S1_at--1090--2311Chr09:20005726..20005750 (25 bp)
AAAGTGGTGCTCATTTGGCCCAACA
LOC_Os09g33876
Os.49366.1.S1_at--452--8471Chr09:20005741..20005765 (25 bp)
TGGCCCAACACTCTGGTGCTATGAA
LOC_Os09g33876
Os.49366.1.S1_at--840--5491Chr09:20005763..20005787 (25 bp)
GAACATGAAGCAGACTCTCCCAGGG
LOC_Os09g33876
Os.49366.1.S1_at--647--5511Chr09:20005820..20005844 (25 bp)
GAACAATCTCAGGAATGCAGCGCAA
LOC_Os09g33876
Os.49366.1.S1_at--893--10131Chr09:20005880..20005904 (25 bp)
TATGCGTGTGTGTTGTTAGCTGTAA
LOC_Os09g33876
Os.49366.1.S1_at--564--6971Chr09:20005933..20005957 (25 bp)
GTACCAGCCTGGAAAATCTGCGAGT
LOC_Os09g33876
Os.49366.1.S1_at--18--2531Chr09:20006019..20006043 (25 bp)
AACTTCGTGAATTCAGCTATGGTTC
LOC_Os09g33876
Target Sequence 
GAACATCGCAGGAGCGCTCAGGCGACAGATGGCCATGCGACCGCTGCACTTTCATCAACCCGTCCTCTACGAACTCATGC
AACATGTGCGGCAGGAACAAGCCCCGCCGCAGATAGGAAGATTGGTCAAAATGCAGTTGTGCAAAGGAACACCTTCTCAC
TGGGATTCTGGTCGAACAAAGTGGTGCTCATTTGGCCCAACACTCTGGTGCTATGAACATGAAGCAGACTCTCCCAGGGA
TCTGATGATGCTCAGAGGAGATGTAAGAAACGAACAATCTCAGGAATGCAGCGCAAGAGGCTTGGACAAAATTAGGTAGT
AGTAAAACATATATGCGTGTGTGTTGTTAGCTGTAAATATTACTTCATGGAGAAAATTAGGAAAGTACCAGCCTGGAAAA
TCTGCGAGTTATAAAATAGGATTGCATGTGAGAATGACATGTGGGGTCCTCACATGTGATTGTATTTTTCAACTTCGTGA
ATTCAGCTATGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis