Browse Element(s) Details

Os.54331.2.S1_at

Description

gb:AK103415.1
DB_XREF= gi:32988624
TID=Os.54331.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54331 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-C11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033128I03, full insert sequence.
FL= gb:AK103415.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g33900	10/11	FAD dependent oxidoreductase family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g33860	OsAffx.17989.1.S1_s_at	11/11	9	+	19992273..19995387	Protein kinase domain containing protein, expressed
LOC_Os09g33860	OsAffx.17989.1.S1_at	11/11	9	+	19992273..19995387	Protein kinase domain containing protein, expressed
LOC_Os09g33860	Os.6990.1.S1_at	4/11	9	+	19992273..19995387	Protein kinase domain containing protein, expressed
LOC_Os09g33870	Os.5580.1.S1_at	9/11	9	+	19996685..19999169	U1 small nuclear ribonucleoprotein 70 kDa, putative, expressed
LOC_Os09g33876	Os.49366.1.S1_at	11/11	9	+	20000609..20006080	ARI, RING finger protein, putative, expressed
LOC_Os09g33882	Os.55230.1.S1_at	11/11	9	+	20006443..20007191	expressed protein
LOC_Os09g33882	Os.55230.1.S1_x_at	11/11	9	+	20006443..20007191	expressed protein
LOC_Os09g33890	OsAffx.30131.1.S1_at	11/11	9	+	20008662..20010318	hypothetical protein
LOC_Os09g33900	Os.54331.1.S1_at	11/11	9	+	20011042..20017178	FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33900	Os.54331.2.S1_at	10/11	9	+	20011042..20017178	FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33910	Os.53863.1.S1_at	11/11	9	+	20015107..20018910	Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os09g33920	OsAffx.17990.1.S1_at	11/11	9	+	20020280..20022942	expressed protein
LOC_Os09g33930	Os.10844.1.S1_at	11/11	9	+	20023466..20026650	Protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit, putative, expressed
LOC_Os09g33940	OsAffx.30132.1.S1_x_at	11/11	9	+	20031485..20036873	expressed protein
LOC_Os09g33950	OsAffx.6477.1.S1_s_at	11/11	9	+	20039126..20039900	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0006118	biological_process	electron transport
GO:0016491	molecular_function	oxidoreductase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.54331.2.S1_at--1095--271	1	NONE	AAGACAGGTTTTCAGCTTACGACTG	NONE
Os.54331.2.S1_at--1056--311	1	Chr09:20015470..20015494 (25 bp)	AATTTGCTTTTGAGTATCGTCGGGA	LOC_Os09g33900
Os.54331.2.S1_at--609--689	1	Chr09:20015483..20015507 (25 bp)	GTATCGTCGGGAAGCATTTCTCCAG	LOC_Os09g33900
Os.54331.2.S1_at--677--495	1	Chr09:20015496..20015520 (25 bp)	GCATTTCTCCAGTCTGATCCAGATA	LOC_Os09g33900
Os.54331.2.S1_at--340--971	1	Chr09:20015532..20015556 (25 bp)	TCAAACTCCTGATAGCTAATGCGAC	LOC_Os09g33900
Os.54331.2.S1_at--1033--483	1	Chr09:20015546..20015570 (25 bp)	GCTAATGCGACCATCCTGTTGAATA	LOC_Os09g33900
Os.54331.2.S1_at--236--747	1	Chr09:20015613..20015637 (25 bp)	GTGTGTAAAGTGTAAACCCCAACTG	LOC_Os09g33900
Os.54331.2.S1_at--846--815	1	Chr09:20015656..20015680 (25 bp)	GGAAACCATCAAATTACTGTTGCTT	LOC_Os09g33900
Os.54331.2.S1_at--989--1045	1	Chr09:20015669..20015693 (25 bp)	TTACTGTTGCTTCCTGGGTTTCTTG	LOC_Os09g33900
Os.54331.2.S1_at--13--391	1	Chr09:20015682..20015706 (25 bp)	CTGGGTTTCTTGTACACTTGGATGA	LOC_Os09g33900
Os.54331.2.S1_at--198--695	1	Chr09:20015753..20015777 (25 bp)	GTAGACTATGCCTAGAATTCAGCAA	LOC_Os09g33900

Target Sequence

AAGACAGGTTTTCAGCTTACGACTGAGGGAGCTGAAATTTGCTTTTGAGTATCGTCGGGAAGCATTTCTCCAGTCTGATC
CAGATATCATCATTGATTCAAACTCCTGATAGCTAATGCGACCATCCTGTTGAATATATGCACAACATGTCAGTTATACT
ATTGAAGTATTGATACATGTGTGTAAAGTGTAAACCCCAACTGGAAAAAAAAACATGGATAGGAAACCATCAAATTACTG
TTGCTTCCTGGGTTTCTTGTACACTTGGATGAGGATCCAAGATATTTTGCTAAAAAAAAGAAGAGAAGACTAAGTTTAGT
AGACTATGCCTAGAATTCAGCAA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis