Browse Element(s) Details


OsAffx.30131.1.S1_at

Description tigr:9637.m02920
TID=OsAffx.30131.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3389011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33850OsAffx.30130.1.S1_at11/119+19979959..19985742Phosphatidylethanolamine-binding protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_s_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860Os.6990.1.S1_at4/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33870Os.5580.1.S1_at9/119+19996685..19999169U1 small nuclear ribonucleoprotein 70 kDa, putative, expressed
LOC_Os09g33876Os.49366.1.S1_at11/119+20000609..20006080ARI, RING finger protein, putative, expressed
LOC_Os09g33882Os.55230.1.S1_at11/119+20006443..20007191expressed protein
LOC_Os09g33882Os.55230.1.S1_x_at11/119+20006443..20007191expressed protein
LOC_Os09g33890OsAffx.30131.1.S1_at11/119+20008662..20010318hypothetical protein
LOC_Os09g33900Os.54331.1.S1_at11/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33900Os.54331.2.S1_at10/119+20011042..20017178FAD dependent oxidoreductase family protein, expressed
LOC_Os09g33910Os.53863.1.S1_at11/119+20015107..20018910Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os09g33920OsAffx.17990.1.S1_at11/119+20020280..20022942expressed protein
LOC_Os09g33930Os.10844.1.S1_at11/119+20023466..20026650Protein farnesyltransferase/geranylgeranyltransferase type I alphasubunit, putative, expressed
LOC_Os09g33940OsAffx.30132.1.S1_x_at11/119+20031485..20036873expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30131.1.S1_at--396--4371Chr09:20008932..20008956 (25 bp)
GCCACAACTTATAGGCGACTGGAAT
LOC_Os09g33890
OsAffx.30131.1.S1_at--975--5731Chr09:20008916..20008940 (25 bp)
GACTGGAATGAATTTGCCCCACCTG
LOC_Os09g33890
OsAffx.30131.1.S1_at--807--9171Chr09:20008902..20008926 (25 bp)
TGCCCCACCTGAGGGATGGCTGGAA
LOC_Os09g33890
OsAffx.30131.1.S1_at--318--5231Chr09:20008880..20008904 (25 bp)
GAATATCAAGAACCGCAGCTTGTCA
LOC_Os09g33890
OsAffx.30131.1.S1_at--34--9311Chr09:20008847..20008871 (25 bp)
TCCGCCAGGTTCTGCATTTCAAGGT
LOC_Os09g33890
OsAffx.30131.1.S1_at--680--9451Chr09:20008837..20008861 (25 bp)
TCTGCATTTCAAGGTTCTTCCATAT
LOC_Os09g33890
OsAffx.30131.1.S1_at--106--2911Chr09:20008827..20008851 (25 bp)
AAGGTTCTTCCATATTAGGTCCATG
LOC_Os09g33890
OsAffx.30131.1.S1_at--1044--9731Chr09:20008786..20008810 (25 bp)
TAATTGACAGTGTTGTAGTCTTCAC
LOC_Os09g33890
OsAffx.30131.1.S1_at--690--7411Chr09:20008777..20008801 (25 bp)
GTGTTGTAGTCTTCACTGGTGTGGA
LOC_Os09g33890
OsAffx.30131.1.S1_at--303--1251Chr09:20008743..20008767 (25 bp)
AGTTGGGCACAATGGCGATGGTAAT
LOC_Os09g33890
OsAffx.30131.1.S1_at--282--5131Chr09:20008692..20008716 (25 bp)
GCACAAGTCAAGATGTTGCGTGTCT
LOC_Os09g33890
Target Sequence 
GCCACAACTTATAGGCGACTGGAATGAATTTGCCCCACCTGAGGGATGGCTGGAATATCAAGAACCGCAGCTTGTCAACC
TCGGCTCCGCCAGGTTCTGCATTTCAAGGTTCTTCCATATTAGGTCCATGGATAATGATAATGAAGTAATTGACAGTGTT
GTAGTCTTCACTGGTGTGGAGGTGATGCCAGTTGGGCACAATGGCGATGGTAATGGGAAGGTTAAACTTCGAATGGAAAA
GCACAAGTCAAGATGTTGCGTGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis