Browse Element(s) Details


OsAffx.20913.1.A1_at

Description gb:XM_354288.1
DB_XREF= gi:35190009
TID=OsAffx.20913.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g338401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g33790Os.20359.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33790OsAffx.6476.1.S1_at10/119+19950223..19953473SnRK1-interacting protein 1, putative, expressed
LOC_Os09g33800Os.9057.1.S1_a_at11/119+19955242..19957444expressed protein
LOC_Os09g33810Os.12712.1.S1_at11/119+19960623..19963923Ankyrin repeat domain protein 2, putative, expressed
LOC_Os09g33820Os.14901.1.A1_a_at11/119+19964721..19969670phospholipase A1, putative, expressed
LOC_Os09g33830OsAffx.30129.1.S1_at11/119+19970022..19974776anthocyanin-related membrane protein 1, putative, expressed
LOC_Os09g33840OsAffx.19826.2.S1_at4/119+19977286..19979138hypothetical protein
LOC_Os09g33840OsAffx.20913.1.A1_at1/119+19977286..19979138hypothetical protein
LOC_Os09g33850OsAffx.30130.1.S1_at11/119+19979959..19985742Phosphatidylethanolamine-binding protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_s_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860OsAffx.17989.1.S1_at11/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33860Os.6990.1.S1_at4/119+19992273..19995387Protein kinase domain containing protein, expressed
LOC_Os09g33870Os.5580.1.S1_at9/119+19996685..19999169U1 small nuclear ribonucleoprotein 70 kDa, putative, expressed
LOC_Os09g33876Os.49366.1.S1_at11/119+20000609..20006080ARI, RING finger protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20913.1.A1_at--832--7695Chr02:14587183..14587203 (21 bp)
GGGTCCCTCAATTATCAAAACTAGT
NONE
OsAffx.20913.1.A1_at--588--23921Chr12:14880352..14880371 (20 bp)
AAACTAGTGCAGATGAGGTCCCTCG
NONE
OsAffx.20913.1.A1_at--833--2018Chr07:24098439..24098460 (22 bp)
ACTAGTGCAGATGAGGTCCCTCGAC
NONE
OsAffx.20913.1.A1_at--991--9313Chr01:1738954..1738978 (25 bp)
TCCCTCGACGGTTTTGAGAGTGGTT
NONE
OsAffx.20913.1.A1_at--882--10378Chr10:3909062..3909137 (25 bp)
TTTTGAGAGTGGTTTTGGTTGACGT
NONE
OsAffx.20913.1.A1_at--558--44519Chr12:3173454..3173474 (21 bp)
GCCTACGTGGCAAATTTGACTTGTC
NONE
OsAffx.20913.1.A1_at--104--19115Chr11:15839243..15839268 (25 bp)
ACGTGGCAAATTTGACTTGTCTTCA
NONE
OsAffx.20913.1.A1_at--806--9476Chr01:1739023..1739047 (25 bp)
TCTGATGTGGCATTAACGTGGCGCA
NONE
OsAffx.20913.1.A1_at--121--6272Chr07:15352079..15352103 (25 bp)
GATGTGGCATTAACGTGGCGCATAT
NONE
OsAffx.20913.1.A1_at--809--132Chr07:15352071..15352095 (25 bp)
ATTAACGTGGCGCATATGTGGCAAT
NONE
OsAffx.20913.1.A1_at--155--2592Chr07:15352068..15352092 (25 bp)
AACGTGGCGCATATGTGGCAATTTG
NONE
Target Sequence 
GGGTCCCTCAATTATCAAAACTAGTGCAGATGAGGTCCCTCGACGGTTTTGAGAGTGGTTTTGGTTGACGTGGCGCCTAC
GTGGCAAATTTGACTTGTCTTCATCTGATGTGGCATTAACGTGGCGCATATGTGGCAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20913.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis